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The map label for this gene is xcsD [H]

Identifier: 197104120

GI number: 197104120

Start: 705816

End: 707876

Strand: Direct

Name: xcsD [H]

Synonym: PHZ_c0654

Alternate gene names: 197104120

Gene position: 705816-707876 (Clockwise)

Preceding gene: 197104119

Following gene: 197104121

Centisome position: 17.66

GC content: 72.3

Gene sequence:

>2061_bases
GTGAGCGCCCATCCCGTGAGACGACTCCTCGCCGCCGGACTGCTCGCCAGCGCGATGACCGCGACCCTGCCGCCGCCGGC
GCTCGCCCAGGCCCAGGCGCAAACCCAGGGCCAGACCCAGGCGCTGAACCTGCAGGACGCCGACATCCGGGTGTTCATCC
AGGACGTGGCGCGCGCCACCGGCCGGACCTTCATCATCGACCCTCGGGTGCAGGGAAAGGTCTCGGTGGCGAGCCAGGAG
CCGCTGTCCCGGGCCGAGCTGTTCGACGTGCTGATGTCGACGCTGCGGGCCAATGGCCTGGTGGCGATCCCGGCGGGGTC
GGGCGCCTACCGCATCGCGCCGGAAGAGGGCGCCGCCGCCCAGCCCGCGACGCTCGGCGCCGAGGCGGGCTACGGCTTTG
CGACCCAGGTGTTCCGGCTGCGCAACCTGGACGCGGCGTCGGCGGCCGAGACCCTGAAGCCGCTGGTCGGCCGGCAGGGC
GCGATCCAGGCCATCCCCCGCGGCAACATGCTGGTGGTGGCCGACTACGGCGACAACCTGCGCCGGATCCGCAGCCTGCT
GTCGCAGATCGACCAGGACCGCGGGATCACCGAAACGGTGACGCTGAAATCCAGTTCGGCCCGCGAGATCGCCGGGGTGC
TGAACGATCTCCTGAAGGCGCCGGGGGCGGATCCGGCGGCGCGCAACGGCGTCGTCTCGATCATCGTCGTGGACAGCAGC
AACTCGATCATCCTGCGCGGCGAGCCGGACGCAGTGCGCCCGCTGCTGGCCCTGGTGGCCGACCTCGACCGGCGGGCCGA
GAGCGCCGGCGACGTGCGCGTGGTGCAGCTCCAGCACGCCAACGCCGAGCAGCTCGTGCCCGTGCTGCAGCAGCTGGTCG
GACAGACGCCCAGCCCGTCCGCCGGGCCCGCTGCGACCCGCCGCGGCGAGGCGCCGGCGTCCCCTGAGCCCGCGGCGACC
CCCACGGCCGCCGGCCAGGCCCGGGCCAACATCGCGCGCTATCCCGGCGCCAACGCCATCGTCATCGCCGCCGACCCCGA
GACCCAGCGGATGCTGGCCGAGGTGATCCGCCAGCTGGACGTGCGCCGTCGGCAGGTGCTGGTGGAGGCCATCGTCGTCG
AGGTGTCGGACGAGGCGGCCAAGCGGCTGGGCGTGCAGTTCGCCCTGGCCGGGATCAACGGCTCGGCGATCCCGTTCACG
GCCACCAGCTATTCCAACAGCGCCCCGAACCTGCCGGCGGTCATCGGGGCGGTGGCGGCCGAGAAGAATCTGCCGGACGA
CGATGCGACCAAGGCCCTGCTGCGGGACGCGGCCGTCCGCTCGCTGCTGGCGGCCAACGGCGCGCTGATCGGCGGCGGCG
GCCAGATCGGCGACGACGCCCTGTTCGGCCTGGTGATCAACGCCGTGAAGTCCGACACGGCCTCGAACCTGCTCTCGACG
CCGTCGGTGATGACCCTCGACAACCAGCCGGCGACGATTCTGGTGGGCCAGGAGGTGCCGATCACCACGGGCGAGAGCCT
GGGCGCCAACAACGAGAACCCGTTCCGCACCATCGCCCGCCAGAACGTCGGCGTGCAGCTCGAGGTGACGCCCCAGATCA
ACGCGGGCGGGACGATCACCCTGTTCCTGCGCCAGGAGGTTTCGGCGGTGGCCGGGCCGATCAGCGCCAACTTCACCGAG
CTGGTGCTGAACAAGCGCGAGATCGAGACCACCGTGAACGTCGACGACGGCGAGATCATCGTCCTGGGCGGCCTGCTCAG
CCAGGACGAGCGCGCCTCGGTGGAGAAGACGCCGGTGCTGGGCGACATCCCCGGCCTGGGGGCGCTGTTCCGCGGCACCA
ACAAGGCGAAGACCAAGACCAACCTGATGGTCTTCATCCGGCCGAAGATCGTGGGCGACGCGGCGGGCGCGCGGGCCGTC
ACCGGGCCCAAGTACGAGTACATCCGCGGCCAGCAGACGGCCGCCGACCCGCGCCGCCAGAGCGAGCTGGAGGCCCTGGT
GCGGGAGTACCTGCGGGCCGAGCCGCCGACCTCGGCGCCCCTGCCGGCGGGGCCGAAATGA

Upstream 100 bases:

>100_bases
TCAGCCAGCTCCGTGAGGAGCTCTCCCAAGGCTCCGGCGCCGAGCTGCGCTTCGAACGGAACGGCCAGATCATGACCACC
CGCATCCGGACCACCGCCCC

Downstream 100 bases:

>100_bases
CCGCCGTCCCGCGCCTGGCTTACGCCTTCGCCAAGACGCACGGCGTGCTGCTGCTCGACCTGGGCGAGACGGCCGTGGTG
GGCCTGCGCGAAGGGGCCGA

Product: type II secretory pathway protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 686; Mature: 685

Protein sequence:

>686_residues
MSAHPVRRLLAAGLLASAMTATLPPPALAQAQAQTQGQTQALNLQDADIRVFIQDVARATGRTFIIDPRVQGKVSVASQE
PLSRAELFDVLMSTLRANGLVAIPAGSGAYRIAPEEGAAAQPATLGAEAGYGFATQVFRLRNLDAASAAETLKPLVGRQG
AIQAIPRGNMLVVADYGDNLRRIRSLLSQIDQDRGITETVTLKSSSAREIAGVLNDLLKAPGADPAARNGVVSIIVVDSS
NSIILRGEPDAVRPLLALVADLDRRAESAGDVRVVQLQHANAEQLVPVLQQLVGQTPSPSAGPAATRRGEAPASPEPAAT
PTAAGQARANIARYPGANAIVIAADPETQRMLAEVIRQLDVRRRQVLVEAIVVEVSDEAAKRLGVQFALAGINGSAIPFT
ATSYSNSAPNLPAVIGAVAAEKNLPDDDATKALLRDAAVRSLLAANGALIGGGGQIGDDALFGLVINAVKSDTASNLLST
PSVMTLDNQPATILVGQEVPITTGESLGANNENPFRTIARQNVGVQLEVTPQINAGGTITLFLRQEVSAVAGPISANFTE
LVLNKREIETTVNVDDGEIIVLGGLLSQDERASVEKTPVLGDIPGLGALFRGTNKAKTKTNLMVFIRPKIVGDAAGARAV
TGPKYEYIRGQQTAADPRRQSELEALVREYLRAEPPTSAPLPAGPK

Sequences:

>Translated_686_residues
MSAHPVRRLLAAGLLASAMTATLPPPALAQAQAQTQGQTQALNLQDADIRVFIQDVARATGRTFIIDPRVQGKVSVASQE
PLSRAELFDVLMSTLRANGLVAIPAGSGAYRIAPEEGAAAQPATLGAEAGYGFATQVFRLRNLDAASAAETLKPLVGRQG
AIQAIPRGNMLVVADYGDNLRRIRSLLSQIDQDRGITETVTLKSSSAREIAGVLNDLLKAPGADPAARNGVVSIIVVDSS
NSIILRGEPDAVRPLLALVADLDRRAESAGDVRVVQLQHANAEQLVPVLQQLVGQTPSPSAGPAATRRGEAPASPEPAAT
PTAAGQARANIARYPGANAIVIAADPETQRMLAEVIRQLDVRRRQVLVEAIVVEVSDEAAKRLGVQFALAGINGSAIPFT
ATSYSNSAPNLPAVIGAVAAEKNLPDDDATKALLRDAAVRSLLAANGALIGGGGQIGDDALFGLVINAVKSDTASNLLST
PSVMTLDNQPATILVGQEVPITTGESLGANNENPFRTIARQNVGVQLEVTPQINAGGTITLFLRQEVSAVAGPISANFTE
LVLNKREIETTVNVDDGEIIVLGGLLSQDERASVEKTPVLGDIPGLGALFRGTNKAKTKTNLMVFIRPKIVGDAAGARAV
TGPKYEYIRGQQTAADPRRQSELEALVREYLRAEPPTSAPLPAGPK
>Mature_685_residues
SAHPVRRLLAAGLLASAMTATLPPPALAQAQAQTQGQTQALNLQDADIRVFIQDVARATGRTFIIDPRVQGKVSVASQEP
LSRAELFDVLMSTLRANGLVAIPAGSGAYRIAPEEGAAAQPATLGAEAGYGFATQVFRLRNLDAASAAETLKPLVGRQGA
IQAIPRGNMLVVADYGDNLRRIRSLLSQIDQDRGITETVTLKSSSAREIAGVLNDLLKAPGADPAARNGVVSIIVVDSSN
SIILRGEPDAVRPLLALVADLDRRAESAGDVRVVQLQHANAEQLVPVLQQLVGQTPSPSAGPAATRRGEAPASPEPAATP
TAAGQARANIARYPGANAIVIAADPETQRMLAEVIRQLDVRRRQVLVEAIVVEVSDEAAKRLGVQFALAGINGSAIPFTA
TSYSNSAPNLPAVIGAVAAEKNLPDDDATKALLRDAAVRSLLAANGALIGGGGQIGDDALFGLVINAVKSDTASNLLSTP
SVMTLDNQPATILVGQEVPITTGESLGANNENPFRTIARQNVGVQLEVTPQINAGGTITLFLRQEVSAVAGPISANFTEL
VLNKREIETTVNVDDGEIIVLGGLLSQDERASVEKTPVLGDIPGLGALFRGTNKAKTKTNLMVFIRPKIVGDAAGARAVT
GPKYEYIRGQQTAADPRRQSELEALVREYLRAEPPTSAPLPAGPK

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=646, Percent_Identity=31.733746130031, Blast_Score=260, Evalue=2e-70,
Organism=Escherichia coli, GI1789793, Length=284, Percent_Identity=27.4647887323944, Blast_Score=87, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 71566; Mature: 71435

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAHPVRRLLAAGLLASAMTATLPPPALAQAQAQTQGQTQALNLQDADIRVFIQDVARAT
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHC
GRTFIIDPRVQGKVSVASQEPLSRAELFDVLMSTLRANGLVAIPAGSGAYRIAPEEGAAA
CCEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCCCCC
QPATLGAEAGYGFATQVFRLRNLDAASAAETLKPLVGRQGAIQAIPRGNMLVVADYGDNL
CCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCH
RRIRSLLSQIDQDRGITETVTLKSSSAREIAGVLNDLLKAPGADPAARNGVVSIIVVDSS
HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECC
NSIILRGEPDAVRPLLALVADLDRRAESAGDVRVVQLQHANAEQLVPVLQQLVGQTPSPS
CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCC
AGPAATRRGEAPASPEPAATPTAAGQARANIARYPGANAIVIAADPETQRMLAEVIRQLD
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHH
VRRRQVLVEAIVVEVSDEAAKRLGVQFALAGINGSAIPFTATSYSNSAPNLPAVIGAVAA
HHHHHHHHHHHHEECCHHHHHHCCEEEEEECCCCCCCCEEECCCCCCCCCCHHHHHHHHH
EKNLPDDDATKALLRDAAVRSLLAANGALIGGGGQIGDDALFGLVINAVKSDTASNLLST
CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCC
PSVMTLDNQPATILVGQEVPITTGESLGANNENPFRTIARQNVGVQLEVTPQINAGGTIT
CCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCEEE
LFLRQEVSAVAGPISANFTELVLNKREIETTVNVDDGEIIVLGGLLSQDERASVEKTPVL
EEEEHHHHHHHCCCCCCHHHHHHHHHHCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCC
GDIPGLGALFRGTNKAKTKTNLMVFIRPKIVGDAAGARAVTGPKYEYIRGQQTAADPRRQ
CCCCCCHHHHCCCCCCCCCCCEEEEEECEEECCCCCCCCCCCCCHHHHCCCCCCCCCHHH
SELEALVREYLRAEPPTSAPLPAGPK
HHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SAHPVRRLLAAGLLASAMTATLPPPALAQAQAQTQGQTQALNLQDADIRVFIQDVARAT
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHC
GRTFIIDPRVQGKVSVASQEPLSRAELFDVLMSTLRANGLVAIPAGSGAYRIAPEEGAAA
CCEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCCCCC
QPATLGAEAGYGFATQVFRLRNLDAASAAETLKPLVGRQGAIQAIPRGNMLVVADYGDNL
CCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCH
RRIRSLLSQIDQDRGITETVTLKSSSAREIAGVLNDLLKAPGADPAARNGVVSIIVVDSS
HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECC
NSIILRGEPDAVRPLLALVADLDRRAESAGDVRVVQLQHANAEQLVPVLQQLVGQTPSPS
CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCC
AGPAATRRGEAPASPEPAATPTAAGQARANIARYPGANAIVIAADPETQRMLAEVIRQLD
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHH
VRRRQVLVEAIVVEVSDEAAKRLGVQFALAGINGSAIPFTATSYSNSAPNLPAVIGAVAA
HHHHHHHHHHHHEECCHHHHHHCCEEEEEECCCCCCCCEEECCCCCCCCCCHHHHHHHHH
EKNLPDDDATKALLRDAAVRSLLAANGALIGGGGQIGDDALFGLVINAVKSDTASNLLST
CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCC
PSVMTLDNQPATILVGQEVPITTGESLGANNENPFRTIARQNVGVQLEVTPQINAGGTIT
CCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCEEE
LFLRQEVSAVAGPISANFTELVLNKREIETTVNVDDGEIIVLGGLLSQDERASVEKTPVL
EEEEHHHHHHHCCCCCCHHHHHHHHHHCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCC
GDIPGLGALFRGTNKAKTKTNLMVFIRPKIVGDAAGARAVTGPKYEYIRGQQTAADPRRQ
CCCCCCHHHHCCCCCCCCCCCEEEEEECEEECCCCCCCCCCCCCHHHHCCCCCCCCCHHH
SELEALVREYLRAEPPTSAPLPAGPK
HHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7934833; 10984043 [H]