| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is norB [H]
Identifier: 197104085
GI number: 197104085
Start: 664658
End: 666940
Strand: Direct
Name: norB [H]
Synonym: PHZ_c0619
Alternate gene names: 197104085
Gene position: 664658-666940 (Clockwise)
Preceding gene: 197104083
Following gene: 197104088
Centisome position: 16.63
GC content: 68.33
Gene sequence:
>2283_bases ATGAACACGCGAAGACTATGGTTCGTCCTCGCCATCGTCATGGCGGTGTCCTTCACCGTCCTGGGGCTGATGGGACGAGA GATCTATCGACAGGCGCCGCCGATACCCGAGCGCGTCGTCGATGCGTCCGGCGCGGTGCTGATGACCCGCGAGGACATCC AGACGGGCCAGCTGGCCTGGCAGTCCATGGGCGGCCAGCAGAACGGCTCGATCTGGGGCCACGGCGGCTATGTGGCGCCG GACTGGTCGGCCGACCAGCTGCACCGCGAGGCCACGACCCTGCTGGACATCTGGGGCCGCCGGGACCACGGCGCGCCCTA TGCGGCGCTGAGCGGCGAGGCGCAGGCCTCGCTGAAGGCGCGGCTGAAGGCGGCGTTCCGCACCAACACCTACGACCCCG AGACGAAGACCATCACGGTCTCGCTCGACCGGGCCGAGGCCATGCGCCAGGTGAAGGCGCACTACGTCTCGCTCTACAGC GACAGCGCCGAGCTGGAATCGCTGCGCGAGCAGTACGCGATCAAGAACGCGGCCGTGCCCGACCTCGGGCGGCGCGAGGC GATCGCCGACTACTACTGGTGGAGCGCGTGGGCCGCCGGCACGAACCGGCCGGACGACACCGTCACCTACACCTCGAACT GGCCGCATGAAGAGCTGATCGACAACGTGCCGTCCTCGGCCAACGTCGTCTGGTCGGTGGCCAGCGTCCTGCTGCTGATC TTCGGCGTCGGCGCGCTGGTGTTCTGGCACGCCCGCACCAAGCAGGAAGACCACCTGAAGCCGCCCGCCAGCGACCCGCT GGCGAGCCTGAAGCCGACGCCCTCGATGAAGGCGACCGGCAAGTACTTCCTGACCGTGATCGGCCTCTTCCTGCTGCAGG TGGGCCTGGGCGCCGTGACCGCGCACTACGCGGTCGAGGGCCACGAGTTCTACGGGATCCAGATCTCGGACATCATCCCC TATGCGGTCACCCGCACCTGGCACACCCAGCTCGCGGTGTTCTGGATAGCGACCGCGTGGCTGGCCACCGGCCTCTACGT CGCCCCGCTGATCTCCGGCCACGAGCCGAAGTTCCAGCGCCTGGGCGTCAACGTGCTGTGGGCCGCGCTGGTGTTCGTGG TGCTGGGCTCGATGGCCGGCGAGTGGCTGGGCGTCCAGCAGGTGTTCGACCTCAACACCAACTGGTGGTTCGGCCACCAG GGGTGGGAGTACATCGACCTCGGCCGCTTCTGGCAGATCCTGCTGTTCGTGGGCCTGATGCTGTGGCTGGTGCTCGTCAG CCGCGCCCTGTGGCCGGCCCTGAAGCGGCCGTCCGAGAGCAAGCCGGTCCTGGCCGTGCTGTTCATGTCGACCATCGCCA TCGGCCTCTTCTACGCCGCCAGCTTCATGTGGGGTAAGCACACCCACGTCAGCATGGTGGAGTACTGGCGCTGGTGGGTG GTCCACCTGTGGGTCGAGGGCTTCTTCGAGGTCTTCGCCACCGCCGTCATCAGCCTGCTGCTGGTCAACCTGGGCCTGGT CCGCGCCAAGACCGCGAACGTGGCGGTGCTGTTCGGCACCATCGTGTTCCTGTTCGGCGGCGTGCTGGGCACCGCCCACC ACTGGTACTTCTCGGGCACCCCGGTGTCGGTGATCGCGATCGGCTCGGTGTTCTCGGCCCTGGAGGTCGTGCCGCTGGCC CTGATCGGGGCGGAAGCCTTCGAGAACTGGCGCCACACCAAGGCCGCGCCCTGGGTCTCCACCTACAAGTGGCCGATCCT GTTCTTCGTGGCCGTGGCGTTCTGGAACCTGCTGGGGGCCGGCGTCTTCGGGTTCATGATCAACCCGCCGATCAGCCTCT ACTACATCCAGGGGCTCAACACGACGGCCACCCACGCCCACTCGGCCCTGTTCGGGGTCTACGGGATGCTGGGCATCGGC CTTCTGCTCTTCTGCTTCCGCGGGCTCGCCCGGCGCGAGGCCTGGAGCGACAAGCTGCTGGGCTGGACCTTCTGGCTCCT GAACGGCGGCCTGGCGATGATGGTCTTCATGTCGCTGCTGCCCGTGGGCGTGGTGCAGGCCTTCGCCAGCATCGAGCACG GCTACTGGTACGCCCGCTCGCCCGAGGTGATCCACTCGCCGCTGGTCGAGACGCTGGTGTGGATGCGGGTGCCCGGGGAC ATCGTCTTCAGCCTCGGCGCCTTCACCCTGGCGGCCTTCGCGGCCCGGCTGCTGATCGGCGGCCGGCGTCCGCGGCAGGC GGTGCAGGAGGAGCCCGCACCGCTGCCGATCGCGGCGGAATAG
Upstream 100 bases:
>100_bases CTTTGGTTGCGCAAGATCAACGTCGGAGGATTTCGTCTCGGGCATGTCCGCCCCATCGGCCGACTTGGGGGCGTCCCCCG GCCTATGGGGAAAAAGCGAG
Downstream 100 bases:
>100_bases GAGACCTGGGAGGGGCCGTCCCACCCCGACAAACGGCTTCTTCCGGCGGAGGGCCGGGCGGCGACGCCCGGCCCTTCTTC TTTGGCCCTTCTTCTTTGGC
Product: nitric oxide reductase, subunit B
Products: NA
Alternate protein names: NOR large subunit; Nitric oxide reductase cytochrome b subunit [H]
Number of amino acids: Translated: 760; Mature: 760
Protein sequence:
>760_residues MNTRRLWFVLAIVMAVSFTVLGLMGREIYRQAPPIPERVVDASGAVLMTREDIQTGQLAWQSMGGQQNGSIWGHGGYVAP DWSADQLHREATTLLDIWGRRDHGAPYAALSGEAQASLKARLKAAFRTNTYDPETKTITVSLDRAEAMRQVKAHYVSLYS DSAELESLREQYAIKNAAVPDLGRREAIADYYWWSAWAAGTNRPDDTVTYTSNWPHEELIDNVPSSANVVWSVASVLLLI FGVGALVFWHARTKQEDHLKPPASDPLASLKPTPSMKATGKYFLTVIGLFLLQVGLGAVTAHYAVEGHEFYGIQISDIIP YAVTRTWHTQLAVFWIATAWLATGLYVAPLISGHEPKFQRLGVNVLWAALVFVVLGSMAGEWLGVQQVFDLNTNWWFGHQ GWEYIDLGRFWQILLFVGLMLWLVLVSRALWPALKRPSESKPVLAVLFMSTIAIGLFYAASFMWGKHTHVSMVEYWRWWV VHLWVEGFFEVFATAVISLLLVNLGLVRAKTANVAVLFGTIVFLFGGVLGTAHHWYFSGTPVSVIAIGSVFSALEVVPLA LIGAEAFENWRHTKAAPWVSTYKWPILFFVAVAFWNLLGAGVFGFMINPPISLYYIQGLNTTATHAHSALFGVYGMLGIG LLLFCFRGLARREAWSDKLLGWTFWLLNGGLAMMVFMSLLPVGVVQAFASIEHGYWYARSPEVIHSPLVETLVWMRVPGD IVFSLGAFTLAAFAARLLIGGRRPRQAVQEEPAPLPIAAE
Sequences:
>Translated_760_residues MNTRRLWFVLAIVMAVSFTVLGLMGREIYRQAPPIPERVVDASGAVLMTREDIQTGQLAWQSMGGQQNGSIWGHGGYVAP DWSADQLHREATTLLDIWGRRDHGAPYAALSGEAQASLKARLKAAFRTNTYDPETKTITVSLDRAEAMRQVKAHYVSLYS DSAELESLREQYAIKNAAVPDLGRREAIADYYWWSAWAAGTNRPDDTVTYTSNWPHEELIDNVPSSANVVWSVASVLLLI FGVGALVFWHARTKQEDHLKPPASDPLASLKPTPSMKATGKYFLTVIGLFLLQVGLGAVTAHYAVEGHEFYGIQISDIIP YAVTRTWHTQLAVFWIATAWLATGLYVAPLISGHEPKFQRLGVNVLWAALVFVVLGSMAGEWLGVQQVFDLNTNWWFGHQ GWEYIDLGRFWQILLFVGLMLWLVLVSRALWPALKRPSESKPVLAVLFMSTIAIGLFYAASFMWGKHTHVSMVEYWRWWV VHLWVEGFFEVFATAVISLLLVNLGLVRAKTANVAVLFGTIVFLFGGVLGTAHHWYFSGTPVSVIAIGSVFSALEVVPLA LIGAEAFENWRHTKAAPWVSTYKWPILFFVAVAFWNLLGAGVFGFMINPPISLYYIQGLNTTATHAHSALFGVYGMLGIG LLLFCFRGLARREAWSDKLLGWTFWLLNGGLAMMVFMSLLPVGVVQAFASIEHGYWYARSPEVIHSPLVETLVWMRVPGD IVFSLGAFTLAAFAARLLIGGRRPRQAVQEEPAPLPIAAE >Mature_760_residues MNTRRLWFVLAIVMAVSFTVLGLMGREIYRQAPPIPERVVDASGAVLMTREDIQTGQLAWQSMGGQQNGSIWGHGGYVAP DWSADQLHREATTLLDIWGRRDHGAPYAALSGEAQASLKARLKAAFRTNTYDPETKTITVSLDRAEAMRQVKAHYVSLYS DSAELESLREQYAIKNAAVPDLGRREAIADYYWWSAWAAGTNRPDDTVTYTSNWPHEELIDNVPSSANVVWSVASVLLLI FGVGALVFWHARTKQEDHLKPPASDPLASLKPTPSMKATGKYFLTVIGLFLLQVGLGAVTAHYAVEGHEFYGIQISDIIP YAVTRTWHTQLAVFWIATAWLATGLYVAPLISGHEPKFQRLGVNVLWAALVFVVLGSMAGEWLGVQQVFDLNTNWWFGHQ GWEYIDLGRFWQILLFVGLMLWLVLVSRALWPALKRPSESKPVLAVLFMSTIAIGLFYAASFMWGKHTHVSMVEYWRWWV VHLWVEGFFEVFATAVISLLLVNLGLVRAKTANVAVLFGTIVFLFGGVLGTAHHWYFSGTPVSVIAIGSVFSALEVVPLA LIGAEAFENWRHTKAAPWVSTYKWPILFFVAVAFWNLLGAGVFGFMINPPISLYYIQGLNTTATHAHSALFGVYGMLGIG LLLFCFRGLARREAWSDKLLGWTFWLLNGGLAMMVFMSLLPVGVVQAFASIEHGYWYARSPEVIHSPLVETLVWMRVPGD IVFSLGAFTLAAFAARLLIGGRRPRQAVQEEPAPLPIAAE
Specific function: Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). NorB is the catalytic subunit of the enzyme complex. Shows proton pump activity across the membrane in denitrifying bacterial cells. The mononitrogen red
COG id: COG3256
COG function: function code P; Nitric oxide reductase large subunit
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the heme-copper respiratory oxidase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000883 [H]
Pfam domain/function: PF00115 COX1 [H]
EC number: =1.7.99.7 [H]
Molecular weight: Translated: 84520; Mature: 84520
Theoretical pI: Translated: 7.69; Mature: 7.69
Prosite motif: PS00077 COX1_CUB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTRRLWFVLAIVMAVSFTVLGLMGREIYRQAPPIPERVVDASGAVLMTREDIQTGQLAW CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEECCCCCHHHHHH QSMGGQQNGSIWGHGGYVAPDWSADQLHREATTLLDIWGRRDHGAPYAALSGEAQASLKA HHCCCCCCCCEEECCCEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHH RLKAAFRTNTYDPETKTITVSLDRAEAMRQVKAHYVSLYSDSAELESLREQYAIKNAAVP HHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC DLGRREAIADYYWWSAWAAGTNRPDDTVTYTSNWPHEELIDNVPSSANVVWSVASVLLLI CCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHH FGVGALVFWHARTKQEDHLKPPASDPLASLKPTPSMKATGKYFLTVIGLFLLQVGLGAVT HHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH AHYAVEGHEFYGIQISDIIPYAVTRTWHTQLAVFWIATAWLATGLYVAPLISGHEPKFQR HHEEECCCEEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH LGVNVLWAALVFVVLGSMAGEWLGVQQVFDLNTNWWFGHQGWEYIDLGRFWQILLFVGLM HHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCEEECCCCCCEEHHHHHHHHHHHHHHH LWLVLVSRALWPALKRPSESKPVLAVLFMSTIAIGLFYAASFMWGKHTHVSMVEYWRWWV HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH VHLWVEGFFEVFATAVISLLLVNLGLVRAKTANVAVLFGTIVFLFGGVLGTAHHWYFSGT HHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCC PVSVIAIGSVFSALEVVPLALIGAEAFENWRHTKAAPWVSTYKWPILFFVAVAFWNLLGA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH GVFGFMINPPISLYYIQGLNTTATHAHSALFGVYGMLGIGLLLFCFRGLARREAWSDKLL HHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GWTFWLLNGGLAMMVFMSLLPVGVVQAFASIEHGYWYARSPEVIHSPLVETLVWMRVPGD HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHCCCHH IVFSLGAFTLAAFAARLLIGGRRPRQAVQEEPAPLPIAAE HHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCC >Mature Secondary Structure MNTRRLWFVLAIVMAVSFTVLGLMGREIYRQAPPIPERVVDASGAVLMTREDIQTGQLAW CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEECCCCCHHHHHH QSMGGQQNGSIWGHGGYVAPDWSADQLHREATTLLDIWGRRDHGAPYAALSGEAQASLKA HHCCCCCCCCEEECCCEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHH RLKAAFRTNTYDPETKTITVSLDRAEAMRQVKAHYVSLYSDSAELESLREQYAIKNAAVP HHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC DLGRREAIADYYWWSAWAAGTNRPDDTVTYTSNWPHEELIDNVPSSANVVWSVASVLLLI CCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHH FGVGALVFWHARTKQEDHLKPPASDPLASLKPTPSMKATGKYFLTVIGLFLLQVGLGAVT HHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH AHYAVEGHEFYGIQISDIIPYAVTRTWHTQLAVFWIATAWLATGLYVAPLISGHEPKFQR HHEEECCCEEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH LGVNVLWAALVFVVLGSMAGEWLGVQQVFDLNTNWWFGHQGWEYIDLGRFWQILLFVGLM HHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCEEECCCCCCEEHHHHHHHHHHHHHHH LWLVLVSRALWPALKRPSESKPVLAVLFMSTIAIGLFYAASFMWGKHTHVSMVEYWRWWV HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH VHLWVEGFFEVFATAVISLLLVNLGLVRAKTANVAVLFGTIVFLFGGVLGTAHHWYFSGT HHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCC PVSVIAIGSVFSALEVVPLALIGAEAFENWRHTKAAPWVSTYKWPILFFVAVAFWNLLGA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH GVFGFMINPPISLYYIQGLNTTATHAHSALFGVYGMLGIGLLLFCFRGLARREAWSDKLL HHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GWTFWLLNGGLAMMVFMSLLPVGVVQAFASIEHGYWYARSPEVIHSPLVETLVWMRVPGD HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHCCCHH IVFSLGAFTLAAFAARLLIGGRRPRQAVQEEPAPLPIAAE HHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7711073; 10984043 [H]