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The map label for this gene is 197104035

Identifier: 197104035

GI number: 197104035

Start: 604230

End: 605441

Strand: Reverse

Name: 197104035

Synonym: PHZ_c0569

Alternate gene names: NA

Gene position: 605441-604230 (Counterclockwise)

Preceding gene: 197104036

Following gene: 197104034

Centisome position: 15.15

GC content: 77.89

Gene sequence:

>1212_bases
ATGACGGTCTTCGGCCGGGCGATCGCCGAGGCGCGGCCCAGGGTGGTGGCCGCCCTCGCCGCGCGGCTCCGCGACCTGGA
CCTGGCCGAGGACGCCTTCTCCGACGCCTGCGCGGCGGCCCTCGTGGCCTGGCCGAACCAGCCGCCGCGCGATCCGGCGG
CGTGGCTCTGGCGGGCGGCGCTCCGCCGGGCGATCGACGCCAGGCGCCGCGCCGCGGTCCGGGCGCGCACGATGCTCGAC
CCGCCGGCGCCCCAAGCGAGCCCCGAGGAGGCGCTGATGGCCCACGAGCCCATCCCCGACGAGCGCCTGCGGCTGATCTT
CGTCTGCTGCCATCCGGCGCTGGCGGCCGACGCCCGCGCGGCGCTGACGCTGAAGGTGGTCTGCGGACTTTCCACCCAGC
GGCTGGCGCGGGCCTTTTTCTGCGCCGAGCCGGCCATGCTCCAGCGGATCACCCGGGCCAAGCGGAAGATCGCCGGCGCC
GGCGTCCCGTTCGAGGTCCCCGGCCCCGCCGCCTGGCCCGAGCGGCTGGAGGCGGTGCTGACCACCCTCGAAGTCGCCTA
CGCCCAGGCCTACGAGGACGCCGCCCTGGCCACCGACGCCGCCGGCTTCGCGCCGGAGGTGCTTCGCCTCTCGGGTCTCC
TGGCCGAGCTCATGCCGGGCGAGCCCGAGGTCCTCGGCCTGGCCGCCCTGGTCCGCTTCGCCGAGGCGCGGCGACCCGCC
CGCCTGGACGCGACCGGGGCCATGGTTCCGCCCGAAGCGCAGGAGGCGGACCTGTGGCGGCGCGACCTCATCGCCGAGGG
CGCCGGCCTCCTGGATCGCGCCGCCGGCTTCGCCGGCAGCGGCCCGCGCCAGATCCTGGCGACCATCCACGCCAACCACT
GCGCCCGCGCCGAGGGGCGGCCGACGCCGTGGGCCGACATCGCCCGGCTCTACGACGTCCTGCTCGCGGTGCGGCCGAGC
CCCGCCGCCGCCGTGAACCGCGCCGTGGCGTTGGGGGAGACCGCCGGGGCCGAAGCGGGCCTCGCGGCGCTGGCGCGGGT
TGAAGGCATGCAGGCCTGGCTGCCCTACCAGGCCGCCCTGGCGCACCTGTCGGCGCGGGCCGGCCGCAGGCGCGAGGCGA
TCGCCGCCCTCCGCGCGGCGCTGGGGCTGAACCCCGCGCCCGCCGAGCGGCTGTACCTCCAACGACGGCTGCGCGAGCTG
GAGAAGGCCTAG

Upstream 100 bases:

>100_bases
TCGACGTGCCCGACCTGGACGCGGCCCTGGCCATCGCCCGCCGCGTTCCGGGCGTCGCGGGCTCGAAGACCGAGGTGCGC
CCCCTGCTGGACATGGGCTG

Downstream 100 bases:

>100_bases
CGGGGCTCGACTTACGTCGCGGCGGCCCGTAACCGATGGCCCCATGGACGCCGAGCTCAGCCTCTCCACCGCCCCGTTCC
GCGATCCGCGCTATGCGCCG

Product: RNA polymerase sigma-70 factor, ECF subfamily

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MTVFGRAIAEARPRVVAALAARLRDLDLAEDAFSDACAAALVAWPNQPPRDPAAWLWRAALRRAIDARRRAAVRARTMLD
PPAPQASPEEALMAHEPIPDERLRLIFVCCHPALAADARAALTLKVVCGLSTQRLARAFFCAEPAMLQRITRAKRKIAGA
GVPFEVPGPAAWPERLEAVLTTLEVAYAQAYEDAALATDAAGFAPEVLRLSGLLAELMPGEPEVLGLAALVRFAEARRPA
RLDATGAMVPPEAQEADLWRRDLIAEGAGLLDRAAGFAGSGPRQILATIHANHCARAEGRPTPWADIARLYDVLLAVRPS
PAAAVNRAVALGETAGAEAGLAALARVEGMQAWLPYQAALAHLSARAGRRREAIAALRAALGLNPAPAERLYLQRRLREL
EKA

Sequences:

>Translated_403_residues
MTVFGRAIAEARPRVVAALAARLRDLDLAEDAFSDACAAALVAWPNQPPRDPAAWLWRAALRRAIDARRRAAVRARTMLD
PPAPQASPEEALMAHEPIPDERLRLIFVCCHPALAADARAALTLKVVCGLSTQRLARAFFCAEPAMLQRITRAKRKIAGA
GVPFEVPGPAAWPERLEAVLTTLEVAYAQAYEDAALATDAAGFAPEVLRLSGLLAELMPGEPEVLGLAALVRFAEARRPA
RLDATGAMVPPEAQEADLWRRDLIAEGAGLLDRAAGFAGSGPRQILATIHANHCARAEGRPTPWADIARLYDVLLAVRPS
PAAAVNRAVALGETAGAEAGLAALARVEGMQAWLPYQAALAHLSARAGRRREAIAALRAALGLNPAPAERLYLQRRLREL
EKA
>Mature_402_residues
TVFGRAIAEARPRVVAALAARLRDLDLAEDAFSDACAAALVAWPNQPPRDPAAWLWRAALRRAIDARRRAAVRARTMLDP
PAPQASPEEALMAHEPIPDERLRLIFVCCHPALAADARAALTLKVVCGLSTQRLARAFFCAEPAMLQRITRAKRKIAGAG
VPFEVPGPAAWPERLEAVLTTLEVAYAQAYEDAALATDAAGFAPEVLRLSGLLAELMPGEPEVLGLAALVRFAEARRPAR
LDATGAMVPPEAQEADLWRRDLIAEGAGLLDRAAGFAGSGPRQILATIHANHCARAEGRPTPWADIARLYDVLLAVRPSP
AAAVNRAVALGETAGAEAGLAALARVEGMQAWLPYQAALAHLSARAGRRREAIAALRAALGLNPAPAERLYLQRRLRELE
KA

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 43071; Mature: 42940

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVFGRAIAEARPRVVAALAARLRDLDLAEDAFSDACAAALVAWPNQPPRDPAAWLWRAA
CCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
LRRAIDARRRAAVRARTMLDPPAPQASPEEALMAHEPIPDERLRLIFVCCHPALAADARA
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHEEEEEECCCHHHHCCHH
ALTLKVVCGLSTQRLARAFFCAEPAMLQRITRAKRKIAGAGVPFEVPGPAAWPERLEAVL
HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
TTLEVAYAQAYEDAALATDAAGFAPEVLRLSGLLAELMPGEPEVLGLAALVRFAEARRPA
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
RLDATGAMVPPEAQEADLWRRDLIAEGAGLLDRAAGFAGSGPRQILATIHANHCARAEGR
CCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
PTPWADIARLYDVLLAVRPSPAAAVNRAVALGETAGAEAGLAALARVEGMQAWLPYQAAL
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHH
AHLSARAGRRREAIAALRAALGLNPAPAERLYLQRRLRELEKA
HHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TVFGRAIAEARPRVVAALAARLRDLDLAEDAFSDACAAALVAWPNQPPRDPAAWLWRAA
CCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
LRRAIDARRRAAVRARTMLDPPAPQASPEEALMAHEPIPDERLRLIFVCCHPALAADARA
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHEEEEEECCCHHHHCCHH
ALTLKVVCGLSTQRLARAFFCAEPAMLQRITRAKRKIAGAGVPFEVPGPAAWPERLEAVL
HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
TTLEVAYAQAYEDAALATDAAGFAPEVLRLSGLLAELMPGEPEVLGLAALVRFAEARRPA
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
RLDATGAMVPPEAQEADLWRRDLIAEGAGLLDRAAGFAGSGPRQILATIHANHCARAEGR
CCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
PTPWADIARLYDVLLAVRPSPAAAVNRAVALGETAGAEAGLAALARVEGMQAWLPYQAAL
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHH
AHLSARAGRRREAIAALRAALGLNPAPAERLYLQRRLRELEKA
HHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]