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The map label for this gene is yciR [C]

Identifier: 197104018

GI number: 197104018

Start: 583766

End: 585424

Strand: Direct

Name: yciR [C]

Synonym: PHZ_c0552

Alternate gene names: 197104018

Gene position: 583766-585424 (Clockwise)

Preceding gene: 197104017

Following gene: 197104020

Centisome position: 14.61

GC content: 74.44

Gene sequence:

>1659_bases
ATGTCGAACGACCGCTGGATGTGGGACGCCACGGCCACCTTGGAGGCGCTGGGCGCGGCCGATGTCGCGCTCTGGGTCTG
GGAGCCCGAGAAGGACCGCCTGCGCCTGACGGGCGCGACCCGCGCGCTGGGCCTCGGCCCGCTCGCCCCCGACTGCTCCT
CCGCTGCGCTGCGCGCGCTGTCGCTGCCCCAGGACCGGGTGCTGGCCGAGGACATCCTGCGCGTCCAGCCGCCGGGCGGC
GAGGTGGCCGTGCGCCTTCGCATGCGCGGGGCGGGCGTGTGCATCTGGCGCGGCGTCTGGCTGGAGGAGGGCGTGCGCGC
CGCCGGCGTGGTCGCGCCCGAGACCAAGTTCGCCGCCTCGGACCAGGACACGCTCACCGGCCTGCTGGACCGCCGCAGCT
TCATCCATCGGGCGCGCGAGCGGCTGCAGTCGCCCGGACCCCACGAGCTGATCGTCGCCGACCTGGACCGGCTGCGCCGC
CTCAACGAGGCCCTGGGCCACGAGCGGGCCGACCTCGTGCTGGCGGCGCTGGGCTCGCGCCTGGCCGCCGCCTTCCCGCC
GGGCGCCCTCCTGGCGCGGATCGGCGAGGACGAGTTCGCGGCCTTGTGCGCGGCCGAGAGTTCTCCGGGACCCGAGGCCC
TGCGGCGCGCCCTGGAGCAGCCGCTGCGGGTCGCCGGCTTCGACATCCATCCCACCCTCTCCATCGGCGCGGTCGAGGCC
GAAGGCGGCGACGAGGCTCCCGAGGCGGCCGAGCTGCTGCGGCGGGCCGAGCTGGCCGTGGAAGCCGCCCGCAGCCACGG
GCGCGGCGGGGCGGCCGCCTACGGCCGCAGCCTGGAGACCGACGGCCTGTCGCGGCTGGCGCTGGAGGGCGACCTGAAGG
GGGCGCTGAAGCGCGGCGAGCTCGCGCCCTTTTACCAGCCGATCGTGCGGCTCTCGACCGGGGCCCTGTCAGGCTTCGAG
GCGCTGGTCCGCTGGCGCCACCCGCGCCGGGGCCTGCTGATGCCCGAGCAGTTCCTGCCGCTCTGCGACGAGATGGGGAT
CATGAGCGAGATCGGCGCCATGATGATGCGCGAGGCGGCGCGGCAGCTCGCCGCCTGGCGCCGGCGCCACCGGGCCGCGG
GCGAGCTGTCGGTCTCGGTCAACCTCTCCACCGGCGAGATCGACCGCCCGGACCTGGTCGAGGACGTCCTCGCCATCCGC
AGAGAGACCGACCTGCCGCCGGGCGCCCTGAAGCTGGAGGTGACCGAGAGCGACGTCATGCGCGATCCCGACCGCGCGGC
GGTGACGCTCCGCAACCTGCGGGCCGCCGGCGCGGCCCTGGCCCTGGACGACTTCGGAACCGGCTTCTCGTCCCTCAGCT
ACCTGACCCGGTTGCCCTTCGACACGCTGAAGATCGACCGCTACTTCGTTCGCACCATGGCCACCAACGAGGGCTCGACC
AAGATCGTCTCGTCGGTCGTGAAGCTGGGCCAGGACCTCTCGATGGAGGTGGTGGCCGAGGGGGTGGAGAACGCCGGCAT
GGCCCGCCAGCTGCTGGCCCTGGGCTGCGACTACGGCCAGGGCTTCGGCTATGCCCCGGCCCTGTCGGCCCAGGAGGCCG
AGGTCTACCTCAACGAGAGCTACGTCGACGGCGCGGCGCCCCTGAAGGCGCGAGGCTAG

Upstream 100 bases:

>100_bases
CATGTCCTGTTCGGCCTCGTCAGCCCGTTGGGGGATCACGACGGACCGGACGAGGGGGTGTCGGTCTGACCGGCGCCGTA
GGACGCGCGGCCGAGCTTTC

Downstream 100 bases:

>100_bases
GCGCGAGGCTAGGCGCGAGGCTAGGCGCGGGGCTAGGCCCGGCCCGCCTCGGCGGTCAGGAACGTGGGGTCGATGCCCAG
CTTGGCGACCGCCCGGGCCC

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 552; Mature: 551

Protein sequence:

>552_residues
MSNDRWMWDATATLEALGAADVALWVWEPEKDRLRLTGATRALGLGPLAPDCSSAALRALSLPQDRVLAEDILRVQPPGG
EVAVRLRMRGAGVCIWRGVWLEEGVRAAGVVAPETKFAASDQDTLTGLLDRRSFIHRARERLQSPGPHELIVADLDRLRR
LNEALGHERADLVLAALGSRLAAAFPPGALLARIGEDEFAALCAAESSPGPEALRRALEQPLRVAGFDIHPTLSIGAVEA
EGGDEAPEAAELLRRAELAVEAARSHGRGGAAAYGRSLETDGLSRLALEGDLKGALKRGELAPFYQPIVRLSTGALSGFE
ALVRWRHPRRGLLMPEQFLPLCDEMGIMSEIGAMMMREAARQLAAWRRRHRAAGELSVSVNLSTGEIDRPDLVEDVLAIR
RETDLPPGALKLEVTESDVMRDPDRAAVTLRNLRAAGAALALDDFGTGFSSLSYLTRLPFDTLKIDRYFVRTMATNEGST
KIVSSVVKLGQDLSMEVVAEGVENAGMARQLLALGCDYGQGFGYAPALSAQEAEVYLNESYVDGAAPLKARG

Sequences:

>Translated_552_residues
MSNDRWMWDATATLEALGAADVALWVWEPEKDRLRLTGATRALGLGPLAPDCSSAALRALSLPQDRVLAEDILRVQPPGG
EVAVRLRMRGAGVCIWRGVWLEEGVRAAGVVAPETKFAASDQDTLTGLLDRRSFIHRARERLQSPGPHELIVADLDRLRR
LNEALGHERADLVLAALGSRLAAAFPPGALLARIGEDEFAALCAAESSPGPEALRRALEQPLRVAGFDIHPTLSIGAVEA
EGGDEAPEAAELLRRAELAVEAARSHGRGGAAAYGRSLETDGLSRLALEGDLKGALKRGELAPFYQPIVRLSTGALSGFE
ALVRWRHPRRGLLMPEQFLPLCDEMGIMSEIGAMMMREAARQLAAWRRRHRAAGELSVSVNLSTGEIDRPDLVEDVLAIR
RETDLPPGALKLEVTESDVMRDPDRAAVTLRNLRAAGAALALDDFGTGFSSLSYLTRLPFDTLKIDRYFVRTMATNEGST
KIVSSVVKLGQDLSMEVVAEGVENAGMARQLLALGCDYGQGFGYAPALSAQEAEVYLNESYVDGAAPLKARG
>Mature_551_residues
SNDRWMWDATATLEALGAADVALWVWEPEKDRLRLTGATRALGLGPLAPDCSSAALRALSLPQDRVLAEDILRVQPPGGE
VAVRLRMRGAGVCIWRGVWLEEGVRAAGVVAPETKFAASDQDTLTGLLDRRSFIHRARERLQSPGPHELIVADLDRLRRL
NEALGHERADLVLAALGSRLAAAFPPGALLARIGEDEFAALCAAESSPGPEALRRALEQPLRVAGFDIHPTLSIGAVEAE
GGDEAPEAAELLRRAELAVEAARSHGRGGAAAYGRSLETDGLSRLALEGDLKGALKRGELAPFYQPIVRLSTGALSGFEA
LVRWRHPRRGLLMPEQFLPLCDEMGIMSEIGAMMMREAARQLAAWRRRHRAAGELSVSVNLSTGEIDRPDLVEDVLAIRR
ETDLPPGALKLEVTESDVMRDPDRAAVTLRNLRAAGAALALDDFGTGFSSLSYLTRLPFDTLKIDRYFVRTMATNEGSTK
IVSSVVKLGQDLSMEVVAEGVENAGMARQLLALGCDYGQGFGYAPALSAQEAEVYLNESYVDGAAPLKARG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=418, Percent_Identity=29.4258373205742, Blast_Score=191, Evalue=2e-49,
Organism=Escherichia coli, GI87081921, Length=414, Percent_Identity=29.951690821256, Blast_Score=173, Evalue=3e-44,
Organism=Escherichia coli, GI226510982, Length=403, Percent_Identity=30.7692307692308, Blast_Score=166, Evalue=4e-42,
Organism=Escherichia coli, GI1787055, Length=363, Percent_Identity=25.6198347107438, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI87081845, Length=255, Percent_Identity=33.7254901960784, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI1786507, Length=253, Percent_Identity=29.6442687747036, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI87081743, Length=244, Percent_Identity=31.9672131147541, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI1790496, Length=248, Percent_Identity=31.4516129032258, Blast_Score=135, Evalue=7e-33,
Organism=Escherichia coli, GI87081980, Length=242, Percent_Identity=32.6446280991736, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI1788849, Length=277, Percent_Identity=31.0469314079422, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788502, Length=253, Percent_Identity=29.6442687747036, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI87082096, Length=240, Percent_Identity=28.75, Blast_Score=96, Evalue=9e-21,
Organism=Escherichia coli, GI1788381, Length=448, Percent_Identity=24.7767857142857, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1787410, Length=155, Percent_Identity=29.6774193548387, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI87081881, Length=163, Percent_Identity=31.9018404907975, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI87081977, Length=160, Percent_Identity=28.75, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 59471; Mature: 59339

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNDRWMWDATATLEALGAADVALWVWEPEKDRLRLTGATRALGLGPLAPDCSSAALRAL
CCCCCEEEEHHHHHHHHCCCCEEEEEECCCCCCEEEECCCHHCCCCCCCCCHHHHHHHHH
SLPQDRVLAEDILRVQPPGGEVAVRLRMRGAGVCIWRGVWLEEGVRAAGVVAPETKFAAS
CCCHHHHHHHHHHEECCCCCCEEEEEEECCCCEEEEECCCHHCCCCCCCEECCCCCCCCC
DQDTLTGLLDRRSFIHRARERLQSPGPHELIVADLDRLRRLNEALGHERADLVLAALGSR
CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LAAAFPPGALLARIGEDEFAALCAAESSPGPEALRRALEQPLRVAGFDIHPTLSIGAVEA
HHHCCCCHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHCCCCCCCCCEEEEEEC
EGGDEAPEAAELLRRAELAVEAARSHGRGGAAAYGRSLETDGLSRLALEGDLKGALKRGE
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCHHHEECCCHHHHHHCCC
LAPFYQPIVRLSTGALSGFEALVRWRHPRRGLLMPEQFLPLCDEMGIMSEIGAMMMREAA
CCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
RQLAAWRRRHRAAGELSVSVNLSTGEIDRPDLVEDVLAIRRETDLPPGALKLEVTESDVM
HHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECHHHHH
RDPDRAAVTLRNLRAAGAALALDDFGTGFSSLSYLTRLPFDTLKIDRYFVRTMATNEGST
CCCCHHHHHHHHHHHCCCEEEEHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
KIVSSVVKLGQDLSMEVVAEGVENAGMARQLLALGCDYGQGFGYAPALSAQEAEVYLNES
HHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECC
YVDGAAPLKARG
CCCCCCCCCCCC
>Mature Secondary Structure 
SNDRWMWDATATLEALGAADVALWVWEPEKDRLRLTGATRALGLGPLAPDCSSAALRAL
CCCCEEEEHHHHHHHHCCCCEEEEEECCCCCCEEEECCCHHCCCCCCCCCHHHHHHHHH
SLPQDRVLAEDILRVQPPGGEVAVRLRMRGAGVCIWRGVWLEEGVRAAGVVAPETKFAAS
CCCHHHHHHHHHHEECCCCCCEEEEEEECCCCEEEEECCCHHCCCCCCCEECCCCCCCCC
DQDTLTGLLDRRSFIHRARERLQSPGPHELIVADLDRLRRLNEALGHERADLVLAALGSR
CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LAAAFPPGALLARIGEDEFAALCAAESSPGPEALRRALEQPLRVAGFDIHPTLSIGAVEA
HHHCCCCHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHCCCCCCCCCEEEEEEC
EGGDEAPEAAELLRRAELAVEAARSHGRGGAAAYGRSLETDGLSRLALEGDLKGALKRGE
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCHHHEECCCHHHHHHCCC
LAPFYQPIVRLSTGALSGFEALVRWRHPRRGLLMPEQFLPLCDEMGIMSEIGAMMMREAA
CCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
RQLAAWRRRHRAAGELSVSVNLSTGEIDRPDLVEDVLAIRRETDLPPGALKLEVTESDVM
HHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECHHHHH
RDPDRAAVTLRNLRAAGAALALDDFGTGFSSLSYLTRLPFDTLKIDRYFVRTMATNEGST
CCCCHHHHHHHHHHHCCCEEEEHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
KIVSSVVKLGQDLSMEVVAEGVENAGMARQLLALGCDYGQGFGYAPALSAQEAEVYLNES
HHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECC
YVDGAAPLKARG
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]