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The map label for this gene is yciR [C]

Identifier: 197103816

GI number: 197103816

Start: 353715

End: 355097

Strand: Reverse

Name: yciR [C]

Synonym: PHZ_c0350

Alternate gene names: 197103816

Gene position: 355097-353715 (Counterclockwise)

Preceding gene: 197103818

Following gene: 197103815

Centisome position: 8.89

GC content: 74.26

Gene sequence:

>1383_bases
GTGGCCGACAAGAACTACAGTCATGCGGAGCTGGCCGCACGCGTCGCCGCGCTCGAGGCCGAGCGCGCGCTCACCCTGCG
CCTGGCCCAGACCGATTCCCTGACCGGCCTGCTCAACCGCGGCGCCTTCACGACCCTGCTGTGCGCCCGGCTGGACGCGG
CCCGCGAGAGCGGCGGGACGGTCTCGCTGTTCGTCGTCGACCTCGACCGCTTCAAGCACCTCAACGACACCCTCGGCCAT
CACGCCGGCGACCTGCTGCTGGCCGAGCTGGGCGAGCGGCTGCGCGCCGAGTGCGGCCCCGCCGAGGTCGCCGCCCGCCT
GGGCGGGGACGAGTTCGCGATCATCTCCGACGCGCGCGAGGTGGGCCGCCGGGCCGCCCGGCTGGTCTCGGTCGTCTCCC
AGCCGCAGATGATCTACGGCCGCCAGGTCTCGCCCGGCGCCTCGGTCGGCGTGGCCGTCTTCCCGCAGGACGCCGGCGAC
GCCGCCGACCTGCAGCGCTTCGCGGACCTGGCGCTCTACCGCGTGAAGACCCGCGGCGGGCGCCGCTGGTCGGCGTTCGA
CGCCGAGCTGCGCGCCGAGAACGAGCGCCGCCGCACCCTGGAGGAGGAGCTGCGCCGCGCCATTCCCGCCGGCGAGATCG
AGCCCTGGTTCCAGCCGGTGATCGATTCCACCACCGGCGGGATCACCGGCGTCGAGGTGCTGGCCCGGTGGAACCATCCC
GAACAGGGGCTGCTCTCGCCCGCCGCCTTCGTGCCCATGGCCGAGGAGCTGGGCCTGATCCGGGCGATCGACGAGGCGGT
GTTCGACGCCGCCTGCGCCCGGGCCGCCCCGTGGGTCGCCGACGGCCTCATCGAGCACGTGGCCTGCAACGTCAGCCCGC
GCGACCTCCTCGACCCCGGCTTCTCGCGCAAGCTGATCGGCCGCCTCGCCGGCACCGACCTGCCCGCCACCGCCCTCACC
GTCGAGATCACCGAGACCTTCCTGCTACAGGACATGGCGCTGGCCCGCCGGCACATCGAGCGCCTGGCCGCCAAGGGCGT
GCGCGTGGCCCTCGACGACTTCGGCACCGGCTACTCCAACCTGCGCGCGCTCATGCACCTGCCGATCCAGACCGTGAAGC
TGGACCGCTCGCTGATCGCCGACGTCGGCCGCGACGCGCGGGTCTCCAAGCTGGTCGCCTCGCTGCTGCACGCCGCCCGC
GCCCTGGGCGTCTCGATCATCGCCGAAGGCGTCGAGGACGAGGGCCAGGCGCTGTTCCTCCGCTCGGCCGGCTGCGACCG
GATGCAGGGCTACTTCTTCGCCCGGCCGATGTCCGCGGACGCCATGGAGGCCCAGTTGCTCGAGGCCCGGCCCCAGCCCG
CCCGCCGCCGCGCCGCGCGCTGA

Upstream 100 bases:

>100_bases
GCTACGGCCGCAAGGCTCCGTTAGCCATAGGGCTTAACCGGGCGTTCGCCCCGTTCGCGGAATCTGCCCGTTCCGTGGAG
CTGAGGCAGAACGCCGGGCC

Downstream 100 bases:

>100_bases
GCCCCGCTTAAACCGGGCGCGCCGAATCCCCACATTCCCGCCAGGGCCATTCCGGCCACGTCGAGACCTGGGAGACCATG
CGCAACCACCTTCGCACCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 459

Protein sequence:

>460_residues
MADKNYSHAELAARVAALEAERALTLRLAQTDSLTGLLNRGAFTTLLCARLDAARESGGTVSLFVVDLDRFKHLNDTLGH
HAGDLLLAELGERLRAECGPAEVAARLGGDEFAIISDAREVGRRAARLVSVVSQPQMIYGRQVSPGASVGVAVFPQDAGD
AADLQRFADLALYRVKTRGGRRWSAFDAELRAENERRRTLEEELRRAIPAGEIEPWFQPVIDSTTGGITGVEVLARWNHP
EQGLLSPAAFVPMAEELGLIRAIDEAVFDAACARAAPWVADGLIEHVACNVSPRDLLDPGFSRKLIGRLAGTDLPATALT
VEITETFLLQDMALARRHIERLAAKGVRVALDDFGTGYSNLRALMHLPIQTVKLDRSLIADVGRDARVSKLVASLLHAAR
ALGVSIIAEGVEDEGQALFLRSAGCDRMQGYFFARPMSADAMEAQLLEARPQPARRRAAR

Sequences:

>Translated_460_residues
MADKNYSHAELAARVAALEAERALTLRLAQTDSLTGLLNRGAFTTLLCARLDAARESGGTVSLFVVDLDRFKHLNDTLGH
HAGDLLLAELGERLRAECGPAEVAARLGGDEFAIISDAREVGRRAARLVSVVSQPQMIYGRQVSPGASVGVAVFPQDAGD
AADLQRFADLALYRVKTRGGRRWSAFDAELRAENERRRTLEEELRRAIPAGEIEPWFQPVIDSTTGGITGVEVLARWNHP
EQGLLSPAAFVPMAEELGLIRAIDEAVFDAACARAAPWVADGLIEHVACNVSPRDLLDPGFSRKLIGRLAGTDLPATALT
VEITETFLLQDMALARRHIERLAAKGVRVALDDFGTGYSNLRALMHLPIQTVKLDRSLIADVGRDARVSKLVASLLHAAR
ALGVSIIAEGVEDEGQALFLRSAGCDRMQGYFFARPMSADAMEAQLLEARPQPARRRAAR
>Mature_459_residues
ADKNYSHAELAARVAALEAERALTLRLAQTDSLTGLLNRGAFTTLLCARLDAARESGGTVSLFVVDLDRFKHLNDTLGHH
AGDLLLAELGERLRAECGPAEVAARLGGDEFAIISDAREVGRRAARLVSVVSQPQMIYGRQVSPGASVGVAVFPQDAGDA
ADLQRFADLALYRVKTRGGRRWSAFDAELRAENERRRTLEEELRRAIPAGEIEPWFQPVIDSTTGGITGVEVLARWNHPE
QGLLSPAAFVPMAEELGLIRAIDEAVFDAACARAAPWVADGLIEHVACNVSPRDLLDPGFSRKLIGRLAGTDLPATALTV
EITETFLLQDMALARRHIERLAAKGVRVALDDFGTGYSNLRALMHLPIQTVKLDRSLIADVGRDARVSKLVASLLHAARA
LGVSIIAEGVEDEGQALFLRSAGCDRMQGYFFARPMSADAMEAQLLEARPQPARRRAAR

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=419, Percent_Identity=33.890214797136, Blast_Score=223, Evalue=2e-59,
Organism=Escherichia coli, GI87081921, Length=452, Percent_Identity=29.4247787610619, Blast_Score=207, Evalue=1e-54,
Organism=Escherichia coli, GI226510982, Length=412, Percent_Identity=28.3980582524272, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI87081845, Length=261, Percent_Identity=36.3984674329502, Blast_Score=159, Evalue=4e-40,
Organism=Escherichia coli, GI1787055, Length=262, Percent_Identity=33.206106870229, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1786507, Length=244, Percent_Identity=31.9672131147541, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI87081980, Length=263, Percent_Identity=33.4600760456274, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1790496, Length=256, Percent_Identity=32.421875, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI1788502, Length=247, Percent_Identity=32.7935222672065, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1788849, Length=205, Percent_Identity=31.7073170731707, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87081743, Length=246, Percent_Identity=26.8292682926829, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI87082096, Length=340, Percent_Identity=24.4117647058824, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1788381, Length=183, Percent_Identity=33.879781420765, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI87081977, Length=177, Percent_Identity=34.4632768361582, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788956, Length=164, Percent_Identity=35.9756097560976, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=32.9268292682927, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1786584, Length=158, Percent_Identity=31.0126582278481, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87081974, Length=85, Percent_Identity=42.3529411764706, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1789650, Length=426, Percent_Identity=23.0046948356808, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787262, Length=169, Percent_Identity=27.810650887574, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI87082007, Length=166, Percent_Identity=31.9277108433735, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787410, Length=221, Percent_Identity=24.8868778280543, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI87081881, Length=157, Percent_Identity=30.5732484076433, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 49832; Mature: 49701

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADKNYSHAELAARVAALEAERALTLRLAQTDSLTGLLNRGAFTTLLCARLDAARESGGT
CCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHCCCCE
VSLFVVDLDRFKHLNDTLGHHAGDLLLAELGERLRAECGPAEVAARLGGDEFAIISDARE
EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEHHHHH
VGRRAARLVSVVSQPQMIYGRQVSPGASVGVAVFPQDAGDAADLQRFADLALYRVKTRGG
HHHHHHHHHHHHCCCHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
RRWSAFDAELRAENERRRTLEEELRRAIPAGEIEPWFQPVIDSTTGGITGVEVLARWNHP
CEECHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCC
EQGLLSPAAFVPMAEELGLIRAIDEAVFDAACARAAPWVADGLIEHVACNVSPRDLLDPG
CCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHCCCC
FSRKLIGRLAGTDLPATALTVEITETFLLQDMALARRHIERLAAKGVRVALDDFGTGYSN
HHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHCCCCHHH
LRALMHLPIQTVKLDRSLIADVGRDARVSKLVASLLHAARALGVSIIAEGVEDEGQALFL
HHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
RSAGCDRMQGYFFARPMSADAMEAQLLEARPQPARRRAAR
ECCCCCHHCCEEEECCCCCHHHHHHHHHCCCCHHHHCCCC
>Mature Secondary Structure 
ADKNYSHAELAARVAALEAERALTLRLAQTDSLTGLLNRGAFTTLLCARLDAARESGGT
CCCCCCHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHCCCCE
VSLFVVDLDRFKHLNDTLGHHAGDLLLAELGERLRAECGPAEVAARLGGDEFAIISDARE
EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEHHHHH
VGRRAARLVSVVSQPQMIYGRQVSPGASVGVAVFPQDAGDAADLQRFADLALYRVKTRGG
HHHHHHHHHHHHCCCHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
RRWSAFDAELRAENERRRTLEEELRRAIPAGEIEPWFQPVIDSTTGGITGVEVLARWNHP
CEECHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCC
EQGLLSPAAFVPMAEELGLIRAIDEAVFDAACARAAPWVADGLIEHVACNVSPRDLLDPG
CCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHCCCC
FSRKLIGRLAGTDLPATALTVEITETFLLQDMALARRHIERLAAKGVRVALDDFGTGYSN
HHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHCCCCHHH
LRALMHLPIQTVKLDRSLIADVGRDARVSKLVASLLHAARALGVSIIAEGVEDEGQALFL
HHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
RSAGCDRMQGYFFARPMSADAMEAQLLEARPQPARRRAAR
ECCCCCHHCCEEEECCCCCHHHHHHHHHCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]