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The map label for this gene is bfrD [H]

Identifier: 197103759

GI number: 197103759

Start: 287981

End: 290269

Strand: Reverse

Name: bfrD [H]

Synonym: PHZ_c0293

Alternate gene names: 197103759

Gene position: 290269-287981 (Counterclockwise)

Preceding gene: 197103760

Following gene: 197103758

Centisome position: 7.26

GC content: 71.08

Gene sequence:

>2289_bases
ATGTCGGCGGTACGGGGCGTGGTCGCCCGCAAGAAGCGCGCGCTGGCGTTTGTGGCGGGCGTGGCGGGGCTTTCGCTGGG
GGCCGCGGCCCAGGCCGAAGAGGCGGCGAGCGCGGCGGCCGAGGCCGCGCCCGAGCTGTCGGGCGTGGACGTGACCGGCG
CGCGGCATCGCGAGCCGGAGTCGCCGAAGTTCACCGCGCCGCTGGTGGACACGCCGCGCACGGTGACGGTGATCCCGCGG
GAGGTGATCGAGCGCACCGCGGCCACCTCGCTGACGGACATCCTGCGCACCTCCCCCGGCATCACGTTCGGAGCTGGCGA
GGGCGGCCAGCCGCTGGCCGACCGGCCGTTCATCCGCGGCCAGGCGTCGGGCAACAACATCTTCGTGGACGGGGTGCGCG
ACACCGGCGGCCAGACCCGCGAGGTGTTCAGCCTGGAGCAGGTCGAGGTCATCAAGGGCGCCGACAGCGCCTATTCCGGC
CGCGGCTCGGGCGGCGGCAGCATCAACCTGACCAGCAAGCGCCCGCGCCTCGACAGCTTCGTGGGCGTGCAGGCCTCGGC
CGGGACCGACGCCTACTACCGGGCCGTGGTGGATGCGAACCACCAGATCGGCGAGACGAGCGCCGTGCGCCTGAACCTGA
TGGGCATGGAGGCCGACACGCCCGGCCGCGACGCCGCTGAGACCAGCCGCTACGGCCTGCTGGCCGGGATCGCCACCGGC
CTCGGCACGGAGACCCGGGCGACCCTGCTCTACTACCGCCTGCGCACCGACGACCTGCCGGACTACGGCGTGCCGCTGTT
CACCAAGGCCCGTGACCTGCCGCGCACCGACAGCGGCGTGCTGCCCGTGCCCCGCGACAGCTTCTACGGCCTGAAGGCCC
GCGACTACCAGGAGACCGAGGCCGACATCGCGACCTTCGTCGCCGAGCACGACGTCTCGGGAGCCTTCCGGCTCCGCAAC
GTCTTCCGCGCCTCCCGGACCCTGAACGACTATGTGGTGACCAACCCCGGCGACGGCGGCGCGGCCCAGTTCGTCGCCGG
CGAGTGGTGGATGAAGCGCGGGACCAAGTCGCGCTGGAATCCCACCCGCACGATCGCCAACGTCACCGACGTCTACGGCA
AGTTCGCCACCGGCTTCGCCGAGCACAGCTACGCGGTCGGCCTCGAACTCTCCCGCGAGCAGAACAAGAACGCGTCCTAC
GTGGTCTACACCGCGGCCGGCAGCCCCTGCCCGGCGGGCTTCGCGGGCGCCAGCAACAACGCCGGCGTCGGCGACTGCAC
CCGCCTGTTCGCGCCGAACCCGGACGATCCGTGGCAGGGGACGCTCGCCCGGCCCACGCCCTCGCGGAACGACGCCAAGA
CGACCGGCGTCTACGCCTTCGACACCGTCTCGTTCGGCGACAGGTGGCTGCTGAACCTCGGGATCCGGCACGACCGCTAT
TCGGTGTCGGGCACGGACGTCTCGGCGACCAGCGCCGCGGGCGTGATCACCGGCGAGACCCTGACCCATCGCGACGGCGA
GTGGGAGTTCACCAACTACCAGGCGGGCCTCGTCTACAAGCCCACCGAGCACTCCAGCCTCTACGTCTCGTACGGCACCA
CCTCGACCCCGCCCACGATCGCGGCCGGCGACCAGAACACCGGGACGGGCACGGGTCAGGGCAACCTCGCCAACGTGCTG
CTGGAGCCCGAGGAGGTCACCAGCTTCGAAGTGGGCGCCAAGTGGGCCCTGTTCGGCGAGCGGCTGTCGGCTTCGGTCGC
CTACTTCGACCTGACCCGCGAGAACGCCCAGATCCAGGTCTCCCCCGGGGTCTACGCCCAGGCCGGCGAGGCGCAGGTGA
AGGGCGTCGAGGTCGGGGTCAGCGGCGCGGTCACCGAGCGCTGGCAGGTGTTCGGCGGCTACACCTACCAGGACAGCGAG
CTGGTCCGGGGCGCCTACAACGTCGTCAACGTCGGCGATCCGCTGGCCAACACGCCCAAGCACAGCTTCAGCCTGTTCAC
GACCTACGACGTGACCGACGCGCTCATCGTGGGCGGCGGGGCCTACCACGTCTCGAAGAGCTTCGGCGGAAACCAGGGCG
GCGCCGGCGGCGGGAACAACCTCGTCTACGCCCCGTCCTACTGGCGCTTCGACCTCTTCGCCGCCTACCGCGTGACCGAC
AAGGTGGACCTGCAGCTGAACGTCCAGAACGTGGCCGACGAGGACTACATCGTCCGCACCAACGGCGTGCACCACGCCGA
CTACGGCCAGGCCCGGCAGGCGATCCTGACCCTGAACGTCCGCTACTGA

Upstream 100 bases:

>100_bases
CGGCCTGTTGGCGCTTCTTGCGAATGATTCTCATTGCGCAGCCCCGGGCGGCCAACTAAGAACGCTTCTCATTCTTACTG
GAACAAGGAGGACCGGGGAC

Downstream 100 bases:

>100_bases
CCTCCCCACGGTAGCCGGACGCGCGCGGCCCCGTTTCCGGAAGGAGGCGGGGCCGCCCTAGTGTGTGATCCGACGCGAGA
CCCGAAGGCGCCCGCCATGA

Product: TonB-dependent receptor

Products: NA

Alternate protein names: Virulence-associated outer membrane protein Vir-90 [H]

Number of amino acids: Translated: 762; Mature: 761

Protein sequence:

>762_residues
MSAVRGVVARKKRALAFVAGVAGLSLGAAAQAEEAASAAAEAAPELSGVDVTGARHREPESPKFTAPLVDTPRTVTVIPR
EVIERTAATSLTDILRTSPGITFGAGEGGQPLADRPFIRGQASGNNIFVDGVRDTGGQTREVFSLEQVEVIKGADSAYSG
RGSGGGSINLTSKRPRLDSFVGVQASAGTDAYYRAVVDANHQIGETSAVRLNLMGMEADTPGRDAAETSRYGLLAGIATG
LGTETRATLLYYRLRTDDLPDYGVPLFTKARDLPRTDSGVLPVPRDSFYGLKARDYQETEADIATFVAEHDVSGAFRLRN
VFRASRTLNDYVVTNPGDGGAAQFVAGEWWMKRGTKSRWNPTRTIANVTDVYGKFATGFAEHSYAVGLELSREQNKNASY
VVYTAAGSPCPAGFAGASNNAGVGDCTRLFAPNPDDPWQGTLARPTPSRNDAKTTGVYAFDTVSFGDRWLLNLGIRHDRY
SVSGTDVSATSAAGVITGETLTHRDGEWEFTNYQAGLVYKPTEHSSLYVSYGTTSTPPTIAAGDQNTGTGTGQGNLANVL
LEPEEVTSFEVGAKWALFGERLSASVAYFDLTRENAQIQVSPGVYAQAGEAQVKGVEVGVSGAVTERWQVFGGYTYQDSE
LVRGAYNVVNVGDPLANTPKHSFSLFTTYDVTDALIVGGGAYHVSKSFGGNQGGAGGGNNLVYAPSYWRFDLFAAYRVTD
KVDLQLNVQNVADEDYIVRTNGVHHADYGQARQAILTLNVRY

Sequences:

>Translated_762_residues
MSAVRGVVARKKRALAFVAGVAGLSLGAAAQAEEAASAAAEAAPELSGVDVTGARHREPESPKFTAPLVDTPRTVTVIPR
EVIERTAATSLTDILRTSPGITFGAGEGGQPLADRPFIRGQASGNNIFVDGVRDTGGQTREVFSLEQVEVIKGADSAYSG
RGSGGGSINLTSKRPRLDSFVGVQASAGTDAYYRAVVDANHQIGETSAVRLNLMGMEADTPGRDAAETSRYGLLAGIATG
LGTETRATLLYYRLRTDDLPDYGVPLFTKARDLPRTDSGVLPVPRDSFYGLKARDYQETEADIATFVAEHDVSGAFRLRN
VFRASRTLNDYVVTNPGDGGAAQFVAGEWWMKRGTKSRWNPTRTIANVTDVYGKFATGFAEHSYAVGLELSREQNKNASY
VVYTAAGSPCPAGFAGASNNAGVGDCTRLFAPNPDDPWQGTLARPTPSRNDAKTTGVYAFDTVSFGDRWLLNLGIRHDRY
SVSGTDVSATSAAGVITGETLTHRDGEWEFTNYQAGLVYKPTEHSSLYVSYGTTSTPPTIAAGDQNTGTGTGQGNLANVL
LEPEEVTSFEVGAKWALFGERLSASVAYFDLTRENAQIQVSPGVYAQAGEAQVKGVEVGVSGAVTERWQVFGGYTYQDSE
LVRGAYNVVNVGDPLANTPKHSFSLFTTYDVTDALIVGGGAYHVSKSFGGNQGGAGGGNNLVYAPSYWRFDLFAAYRVTD
KVDLQLNVQNVADEDYIVRTNGVHHADYGQARQAILTLNVRY
>Mature_761_residues
SAVRGVVARKKRALAFVAGVAGLSLGAAAQAEEAASAAAEAAPELSGVDVTGARHREPESPKFTAPLVDTPRTVTVIPRE
VIERTAATSLTDILRTSPGITFGAGEGGQPLADRPFIRGQASGNNIFVDGVRDTGGQTREVFSLEQVEVIKGADSAYSGR
GSGGGSINLTSKRPRLDSFVGVQASAGTDAYYRAVVDANHQIGETSAVRLNLMGMEADTPGRDAAETSRYGLLAGIATGL
GTETRATLLYYRLRTDDLPDYGVPLFTKARDLPRTDSGVLPVPRDSFYGLKARDYQETEADIATFVAEHDVSGAFRLRNV
FRASRTLNDYVVTNPGDGGAAQFVAGEWWMKRGTKSRWNPTRTIANVTDVYGKFATGFAEHSYAVGLELSREQNKNASYV
VYTAAGSPCPAGFAGASNNAGVGDCTRLFAPNPDDPWQGTLARPTPSRNDAKTTGVYAFDTVSFGDRWLLNLGIRHDRYS
VSGTDVSATSAAGVITGETLTHRDGEWEFTNYQAGLVYKPTEHSSLYVSYGTTSTPPTIAAGDQNTGTGTGQGNLANVLL
EPEEVTSFEVGAKWALFGERLSASVAYFDLTRENAQIQVSPGVYAQAGEAQVKGVEVGVSGAVTERWQVFGGYTYQDSEL
VRGAYNVVNVGDPLANTPKHSFSLFTTYDVTDALIVGGGAYHVSKSFGGNQGGAGGGNNLVYAPSYWRFDLFAAYRVTDK
VDLQLNVQNVADEDYIVRTNGVHHADYGQARQAILTLNVRY

Specific function: Probably involved in iron transport [H]

COG id: COG4774

COG function: function code P; Outer membrane receptor for monomeric catechols

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787024, Length=790, Percent_Identity=31.8987341772152, Blast_Score=345, Evalue=6e-96,
Organism=Escherichia coli, GI1786344, Length=786, Percent_Identity=23.6641221374046, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1787344, Length=306, Percent_Identity=27.4509803921569, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1790405, Length=202, Percent_Identity=29.7029702970297, Blast_Score=63, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 81191; Mature: 81060

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVRGVVARKKRALAFVAGVAGLSLGAAAQAEEAASAAAEAAPELSGVDVTGARHREPE
CCHHHHHHHHHHHHHEEEHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCC
SPKFTAPLVDTPRTVTVIPREVIERTAATSLTDILRTSPGITFGAGEGGQPLADRPFIRG
CCCEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEE
QASGNNIFVDGVRDTGGQTREVFSLEQVEVIKGADSAYSGRGSGGGSINLTSKRPRLDSF
ECCCCCEEEECCCCCCCCCHHHHHHHHHHEEECCCCCCCCCCCCCCEEEECCCCCCCCHH
VGVQASAGTDAYYRAVVDANHQIGETSAVRLNLMGMEADTPGRDAAETSRYGLLAGIATG
EEEEECCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHC
LGTETRATLLYYRLRTDDLPDYGVPLFTKARDLPRTDSGVLPVPRDSFYGLKARDYQETE
CCCCCEEEEEEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
ADIATFVAEHDVSGAFRLRNVFRASRTLNDYVVTNPGDGGAAQFVAGEWWMKRGTKSRWN
HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEHHHHHHCCCCCCCC
PTRTIANVTDVYGKFATGFAEHSYAVGLELSREQNKNASYVVYTAAGSPCPAGFAGASNN
CHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCC
AGVGDCTRLFAPNPDDPWQGTLARPTPSRNDAKTTGVYAFDTVSFGDRWLLNLGIRHDRY
CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEE
SVSGTDVSATSAAGVITGETLTHRDGEWEFTNYQAGLVYKPTEHSSLYVSYGTTSTPPTI
EECCCCCCCCCCCCEEECCEEECCCCCEEEECEECCEEECCCCCCEEEEECCCCCCCCEE
AAGDQNTGTGTGQGNLANVLLEPEEVTSFEVGAKWALFGERLSASVAYFDLTRENAQIQV
ECCCCCCCCCCCCCCEEEEEECCHHHCEEECCCEEEEEHHHHCCEEEEEEEECCCCEEEE
SPGVYAQAGEAQVKGVEVGVSGAVTERWQVFGGYTYQDSELVRGAYNVVNVGDPLANTPK
CCCCEECCCCCEEEEEEEECCCCCCEEEEEECCEEECCHHHHHCCCCEEECCCCCCCCCC
HSFSLFTTYDVTDALIVGGGAYHVSKSFGGNQGGAGGGNNLVYAPSYWRFDLFAAYRVTD
CCEEEEEEECCCEEEEECCCEEEEECCCCCCCCCCCCCCCEEECCCCCEEEEEEEEEECC
KVDLQLNVQNVADEDYIVRTNGVHHADYGQARQAILTLNVRY
EEEEEEEECCCCCCCEEEEECCCCCCCHHCCCEEEEEEEECC
>Mature Secondary Structure 
SAVRGVVARKKRALAFVAGVAGLSLGAAAQAEEAASAAAEAAPELSGVDVTGARHREPE
CHHHHHHHHHHHHHEEEHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCC
SPKFTAPLVDTPRTVTVIPREVIERTAATSLTDILRTSPGITFGAGEGGQPLADRPFIRG
CCCEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEE
QASGNNIFVDGVRDTGGQTREVFSLEQVEVIKGADSAYSGRGSGGGSINLTSKRPRLDSF
ECCCCCEEEECCCCCCCCCHHHHHHHHHHEEECCCCCCCCCCCCCCEEEECCCCCCCCHH
VGVQASAGTDAYYRAVVDANHQIGETSAVRLNLMGMEADTPGRDAAETSRYGLLAGIATG
EEEEECCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHC
LGTETRATLLYYRLRTDDLPDYGVPLFTKARDLPRTDSGVLPVPRDSFYGLKARDYQETE
CCCCCEEEEEEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
ADIATFVAEHDVSGAFRLRNVFRASRTLNDYVVTNPGDGGAAQFVAGEWWMKRGTKSRWN
HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEHHHHHHCCCCCCCC
PTRTIANVTDVYGKFATGFAEHSYAVGLELSREQNKNASYVVYTAAGSPCPAGFAGASNN
CHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCC
AGVGDCTRLFAPNPDDPWQGTLARPTPSRNDAKTTGVYAFDTVSFGDRWLLNLGIRHDRY
CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEE
SVSGTDVSATSAAGVITGETLTHRDGEWEFTNYQAGLVYKPTEHSSLYVSYGTTSTPPTI
EECCCCCCCCCCCCEEECCEEECCCCCEEEECEECCEEECCCCCCEEEEECCCCCCCCEE
AAGDQNTGTGTGQGNLANVLLEPEEVTSFEVGAKWALFGERLSASVAYFDLTRENAQIQV
ECCCCCCCCCCCCCCEEEEEECCHHHCEEECCCEEEEEHHHHCCEEEEEEEECCCCEEEE
SPGVYAQAGEAQVKGVEVGVSGAVTERWQVFGGYTYQDSELVRGAYNVVNVGDPLANTPK
CCCCEECCCCCEEEEEEEECCCCCCEEEEEECCEEECCHHHHHCCCCEEECCCCCCCCCC
HSFSLFTTYDVTDALIVGGGAYHVSKSFGGNQGGAGGGNNLVYAPSYWRFDLFAAYRVTD
CCEEEEEEECCCEEEEECCCEEEEECCCCCCCCCCCCCCCEEECCCCCEEEEEEEEEECC
KVDLQLNVQNVADEDYIVRTNGVHHADYGQARQAILTLNVRY
EEEEEEEECCCCCCCEEEEECCCCCCCHHCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12910271; 10079522 [H]