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The map label for this gene is exbD [H]

Identifier: 197103736

GI number: 197103736

Start: 266201

End: 266641

Strand: Direct

Name: exbD [H]

Synonym: PHZ_c0270

Alternate gene names: 197103736

Gene position: 266201-266641 (Clockwise)

Preceding gene: 197103734

Following gene: 197103737

Centisome position: 6.66

GC content: 67.12

Gene sequence:

>441_bases
ATGGGTGCTAAAGTCGGCGGCGGGGGCGGAAGCAAGTTCGACCTCGGCCAGAACGCGGACATGAACGTCACGCCCTTCGT
GGACGTGATGCTCGTGCTGCTCATCATCTTCATGGTGTCGATCCCGGCCGCCACGGTGTCGATCAAGCTCGACCTGCCGC
CGGCCATTCCGCCGCCGCCCGGCACGGTGGTGAAGGAGCCGACGCTGATCAACATCCAGCGCGGCGGCCTGTTCATCGGC
GACCAGCCCACGGCGCTCGAGCGCCTGGCCGGCGACCTGACGGCGCAGTTCCAGCGCGACGACCCGAACACCCCGCCGAC
CGAGCAGCGCGTCTACATCCGCGCCGACCGCGACGTCCGCTACGGCGACTTCATGGCGGTGATGAACGACCTGCAGGGCA
ACGGCTTCTACCAGGTCGCGCTGATCAACGAAGAGCTCTAG

Upstream 100 bases:

>100_bases
GCGGGCGCATTCAGCCTTTACAAGCCCAATCCGGCTTGCCAATGGTCGCGGCGAATGGGCCCCGCATAGTTTAAGGGCCC
GAGGGAAGGATCCAGGACGC

Downstream 100 bases:

>100_bases
GCCCTTCGGACACGACATACGGAAGGCCCGCCCGGGGAGACCCGCGGCGGGCTTTTTCGTGGAACCGCGCCATTCGTGGA
ACTGCCTCAGGCCGCGCCGC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MGAKVGGGGGSKFDLGQNADMNVTPFVDVMLVLLIIFMVSIPAATVSIKLDLPPAIPPPPGTVVKEPTLINIQRGGLFIG
DQPTALERLAGDLTAQFQRDDPNTPPTEQRVYIRADRDVRYGDFMAVMNDLQGNGFYQVALINEEL

Sequences:

>Translated_146_residues
MGAKVGGGGGSKFDLGQNADMNVTPFVDVMLVLLIIFMVSIPAATVSIKLDLPPAIPPPPGTVVKEPTLINIQRGGLFIG
DQPTALERLAGDLTAQFQRDDPNTPPTEQRVYIRADRDVRYGDFMAVMNDLQGNGFYQVALINEEL
>Mature_145_residues
GAKVGGGGGSKFDLGQNADMNVTPFVDVMLVLLIIFMVSIPAATVSIKLDLPPAIPPPPGTVVKEPTLINIQRGGLFIGD
QPTALERLAGDLTAQFQRDDPNTPPTEQRVYIRADRDVRYGDFMAVMNDLQGNGFYQVALINEEL

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=133, Percent_Identity=38.3458646616541, Blast_Score=86, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15756; Mature: 15625

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGAKVGGGGGSKFDLGQNADMNVTPFVDVMLVLLIIFMVSIPAATVSIKLDLPPAIPPPP
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCC
GTVVKEPTLINIQRGGLFIGDQPTALERLAGDLTAQFQRDDPNTPPTEQRVYIRADRDVR
CCEECCCEEEEEECCCEEECCCCHHHHHHHHHHHEEEECCCCCCCCCCCEEEEEECCCCC
YGDFMAVMNDLQGNGFYQVALINEEL
HHHHHHHHHHCCCCCEEEEEEEECCC
>Mature Secondary Structure 
GAKVGGGGGSKFDLGQNADMNVTPFVDVMLVLLIIFMVSIPAATVSIKLDLPPAIPPPP
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCC
GTVVKEPTLINIQRGGLFIGDQPTALERLAGDLTAQFQRDDPNTPPTEQRVYIRADRDVR
CCEECCCEEEEEECCCEEECCCCHHHHHHHHHHHEEEECCCCCCCCCCCEEEEEECCCCC
YGDFMAVMNDLQGNGFYQVALINEEL
HHHHHHHHHHCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]