Click here to switch to the map view.

The map label for this gene is atpD [H]

Identifier: 197103703

GI number: 197103703

Start: 240415

End: 241950

Strand: Direct

Name: atpD [H]

Synonym: PHZ_c0237

Alternate gene names: 197103703

Gene position: 240415-241950 (Clockwise)

Preceding gene: 197103702

Following gene: 197103704

Centisome position: 6.02

GC content: 68.23

Gene sequence:

>1536_bases
ATGTCTGAAGCTGCTGTCGCCAAGAAGCCCGCTCGCCGCGCTCCGGCCAAGAAGGCCGCCGGCTCCGCCCCGGCCGCCGC
CCAAGGTGTCGCCACCGGCAAGATCGTCCAGGTCATCGGCGCCGTCGTCGACGTCGAGTTCGAAGGCCACCTGCCGGCGA
TCATGAACGCGCTCGAGACGAGCAACACCGACCAGCGGACGGGCCAGCCCTTCCGCCTGGTGCTCGAGGTCGCCCAGCAC
CTGGGCGAGAACACCGTGCGCACCATCGCCATGGACACCACCGAGGGCCTGACCCGCGGCCAGCCGGTGACCGACACCGG
CGCCTCGATCAGCGTGCCGGTGGGCCCGGCGACGCTCGGCCGCATCATGAACGTCATCGGCGAGCCGATCGACGAGGCCG
GCCCGATCAAGACCACGGAATACGCCCCGATCCACCGCGAGGCCCCGAGCTTCGCCGAGCAGTCGACCTCGGCCGAAGTG
CTCGTCACCGGGATCAAGGTCATCGACCTGATGTGCCCCTACACCAAGGGCGGCAAGATCGGCCTGTTCGGCGGCGCCGG
CGTCGGCAAGACCGTGACGATGCAGGAGCTGATCAACAACATCGCCAAGGCGTACGGCGGCTACTCGGTGCTGGCCGGCG
TGGGCGAGCGGACCCGCGAGGGCAACGACCTCTACCACGAGATGATCGAGTCCAACGTGAACGTGGACCCGAAGAAGAAC
AACGGCTCGACCGAAGGCTCCAAGTGCGCCCTCGTGTACGGCCAGATGAACGAGCCGCCGGGCGCCCGCGCCCGCGTCGC
CCTGACCGGCCTGACCCAGGCCGAGTACTTCCGCGACGTGGAAGGCAAGGACGTGCTGCTGTTCGTCGACAACATCTTCC
GCTTCACCCAGGCGGGCGCCGAGGTGTCGGCGCTGCTGGGCCGCATCCCCTCGGCCGTGGGCTACCAGCCGACGCTGGCC
ACCGAGATGGGCAACCTGCAGGAGCGGATCACCTCGACCAACAAGGGCTCGATCACCTCGGTGCAGGCCATCTACGTGCC
CGCCGACGACCTGACCGACCCGGCGCCGGCCACCTCGTTCGCCCACCTGGACGCCACGACCGTTCTGAGCCGCGACATCG
CCGCCCAGGCCATCTTCCCGGCCGTGGACCCGCTGGACTCCACCTCGCGGATCATGGACCCGCTGGTGATCGGCGAGGAG
CACTACCAGGTCGCCCGCCGCACCCAGGAGATCCTGCAGCAGTACAAGGCGCTGAAGGACATCATCGCCATCCTGGGCAT
GGACGAGCTGTCGGAAGAGGACAAGCTGACGGTCGCCCGCGCCCGTAAGATCCAGCGCTTCCTCTCGCAGCCGTTCCACG
TGGCCGAGCAGTTCACCAACACGCCCGGCGCCTTCGTCGAGCTGAAGGACACCATCCGTTCGTTCAAGGCCATCTGCGAC
GGCGAGTACGACCACCTGCCGGAAGCCGCCTTCTACATGGTGGGCACCATCGAGGAGGCCGTCGCCAAGGCCGAGAAGCT
GGCGGCGGAAGCGTAA

Upstream 100 bases:

>100_bases
CACCCTGCAATACAACCGTTCACGCCAGGCGCAGATCACCAAGGAGCTGATCGAGATCATCTCCGGCGCCGAAGCGCTCT
AGTCACCGAAAGAGCCCGAT

Downstream 100 bases:

>100_bases
GGTCCGATGGCCGACAAGCTCCACTTCTCGCTGGTCTCTCCCGAGCGCGAGCTGTTCTCGGGTCTCGTGGACCAGGTCGA
CGCGCCGGGGTCGGAAGGCG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 511; Mature: 510

Protein sequence:

>511_residues
MSEAAVAKKPARRAPAKKAAGSAPAAAQGVATGKIVQVIGAVVDVEFEGHLPAIMNALETSNTDQRTGQPFRLVLEVAQH
LGENTVRTIAMDTTEGLTRGQPVTDTGASISVPVGPATLGRIMNVIGEPIDEAGPIKTTEYAPIHREAPSFAEQSTSAEV
LVTGIKVIDLMCPYTKGGKIGLFGGAGVGKTVTMQELINNIAKAYGGYSVLAGVGERTREGNDLYHEMIESNVNVDPKKN
NGSTEGSKCALVYGQMNEPPGARARVALTGLTQAEYFRDVEGKDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLA
TEMGNLQERITSTNKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRDIAAQAIFPAVDPLDSTSRIMDPLVIGEE
HYQVARRTQEILQQYKALKDIIAILGMDELSEEDKLTVARARKIQRFLSQPFHVAEQFTNTPGAFVELKDTIRSFKAICD
GEYDHLPEAAFYMVGTIEEAVAKAEKLAAEA

Sequences:

>Translated_511_residues
MSEAAVAKKPARRAPAKKAAGSAPAAAQGVATGKIVQVIGAVVDVEFEGHLPAIMNALETSNTDQRTGQPFRLVLEVAQH
LGENTVRTIAMDTTEGLTRGQPVTDTGASISVPVGPATLGRIMNVIGEPIDEAGPIKTTEYAPIHREAPSFAEQSTSAEV
LVTGIKVIDLMCPYTKGGKIGLFGGAGVGKTVTMQELINNIAKAYGGYSVLAGVGERTREGNDLYHEMIESNVNVDPKKN
NGSTEGSKCALVYGQMNEPPGARARVALTGLTQAEYFRDVEGKDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLA
TEMGNLQERITSTNKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRDIAAQAIFPAVDPLDSTSRIMDPLVIGEE
HYQVARRTQEILQQYKALKDIIAILGMDELSEEDKLTVARARKIQRFLSQPFHVAEQFTNTPGAFVELKDTIRSFKAICD
GEYDHLPEAAFYMVGTIEEAVAKAEKLAAEA
>Mature_510_residues
SEAAVAKKPARRAPAKKAAGSAPAAAQGVATGKIVQVIGAVVDVEFEGHLPAIMNALETSNTDQRTGQPFRLVLEVAQHL
GENTVRTIAMDTTEGLTRGQPVTDTGASISVPVGPATLGRIMNVIGEPIDEAGPIKTTEYAPIHREAPSFAEQSTSAEVL
VTGIKVIDLMCPYTKGGKIGLFGGAGVGKTVTMQELINNIAKAYGGYSVLAGVGERTREGNDLYHEMIESNVNVDPKKNN
GSTEGSKCALVYGQMNEPPGARARVALTGLTQAEYFRDVEGKDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLAT
EMGNLQERITSTNKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRDIAAQAIFPAVDPLDSTSRIMDPLVIGEEH
YQVARRTQEILQQYKALKDIIAILGMDELSEEDKLTVARARKIQRFLSQPFHVAEQFTNTPGAFVELKDTIRSFKAICDG
EYDHLPEAAFYMVGTIEEAVAKAEKLAAEA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=492, Percent_Identity=75.609756097561, Blast_Score=740, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=325, Percent_Identity=30.4615384615385, Blast_Score=120, Evalue=4e-27,
Organism=Homo sapiens, GI19913426, Length=407, Percent_Identity=26.044226044226, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI19913428, Length=371, Percent_Identity=25.8760107816712, Blast_Score=92, Evalue=2e-18,
Organism=Homo sapiens, GI50345984, Length=323, Percent_Identity=24.1486068111455, Blast_Score=84, Evalue=5e-16,
Organism=Homo sapiens, GI4757810, Length=323, Percent_Identity=24.1486068111455, Blast_Score=84, Evalue=5e-16,
Organism=Escherichia coli, GI1790170, Length=479, Percent_Identity=70.7724425887265, Blast_Score=662, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=343, Percent_Identity=28.8629737609329, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1790172, Length=442, Percent_Identity=23.7556561085973, Blast_Score=93, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI25144756, Length=480, Percent_Identity=73.3333333333333, Blast_Score=714, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=311, Percent_Identity=32.1543408360129, Blast_Score=122, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI17570191, Length=401, Percent_Identity=24.6882793017456, Blast_Score=103, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17510931, Length=357, Percent_Identity=25.7703081232493, Blast_Score=103, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI71988080, Length=326, Percent_Identity=24.2331288343558, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71988063, Length=326, Percent_Identity=24.2331288343558, Blast_Score=86, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6322581, Length=503, Percent_Identity=71.1729622266402, Blast_Score=689, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=373, Percent_Identity=27.0777479892761, Blast_Score=101, Evalue=3e-22,
Organism=Saccharomyces cerevisiae, GI6319370, Length=376, Percent_Identity=25.531914893617, Blast_Score=91, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6320016, Length=247, Percent_Identity=27.5303643724696, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24638766, Length=480, Percent_Identity=75, Blast_Score=713, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=494, Percent_Identity=66.1943319838057, Blast_Score=652, Evalue=0.0,
Organism=Drosophila melanogaster, GI24638768, Length=97, Percent_Identity=68.0412371134021, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI20129479, Length=328, Percent_Identity=28.9634146341463, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI24583992, Length=350, Percent_Identity=28.2857142857143, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI24583988, Length=331, Percent_Identity=28.7009063444109, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI24583986, Length=331, Percent_Identity=28.7009063444109, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI24583984, Length=331, Percent_Identity=28.7009063444109, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI281361666, Length=365, Percent_Identity=26.8493150684932, Blast_Score=99, Evalue=7e-21,
Organism=Drosophila melanogaster, GI24646341, Length=365, Percent_Identity=26.8493150684932, Blast_Score=99, Evalue=7e-21,
Organism=Drosophila melanogaster, GI17136796, Length=365, Percent_Identity=26.8493150684932, Blast_Score=99, Evalue=7e-21,
Organism=Drosophila melanogaster, GI24658560, Length=324, Percent_Identity=25, Blast_Score=81, Evalue=2e-15,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 54560; Mature: 54428

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEAAVAKKPARRAPAKKAAGSAPAAAQGVATGKIVQVIGAVVDVEFEGHLPAIMNALET
CCCCHHHCCCHHCCCHHHHCCCCCCHHHCCCHHHHHHHHHHHHEEEECCCCHHHHHHHHC
SNTDQRTGQPFRLVLEVAQHLGENTVRTIAMDTTEGLTRGQPVTDTGASISVPVGPATLG
CCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHH
RIMNVIGEPIDEAGPIKTTEYAPIHREAPSFAEQSTSAEVLVTGIKVIDLMCPYTKGGKI
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCEE
GLFGGAGVGKTVTMQELINNIAKAYGGYSVLAGVGERTREGNDLYHEMIESNVNVDPKKN
EEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCHHCCCCHHHHHHHHHCCCCCCCCCC
NGSTEGSKCALVYGQMNEPPGARARVALTGLTQAEYFRDVEGKDVLLFVDNIFRFTQAGA
CCCCCCCEEEEEEECCCCCCCCCEEEEEECCHHHHHHHCCCCCEEEEEHHHHHHHHHCCH
EVSALLGRIPSAVGYQPTLATEMGNLQERITSTNKGSITSVQAIYVPADDLTDPAPATSF
HHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCC
AHLDATTVLSRDIAAQAIFPAVDPLDSTSRIMDPLVIGEEHYQVARRTQEILQQYKALKD
HHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHH
IIAILGMDELSEEDKLTVARARKIQRFLSQPFHVAEQFTNTPGAFVELKDTIRSFKAICD
HHHHHCCHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCEEEHHHHHHHHHHHHC
GEYDHLPEAAFYMVGTIEEAVAKAEKLAAEA
CCHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SEAAVAKKPARRAPAKKAAGSAPAAAQGVATGKIVQVIGAVVDVEFEGHLPAIMNALET
CCCHHHCCCHHCCCHHHHCCCCCCHHHCCCHHHHHHHHHHHHEEEECCCCHHHHHHHHC
SNTDQRTGQPFRLVLEVAQHLGENTVRTIAMDTTEGLTRGQPVTDTGASISVPVGPATLG
CCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHH
RIMNVIGEPIDEAGPIKTTEYAPIHREAPSFAEQSTSAEVLVTGIKVIDLMCPYTKGGKI
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCEE
GLFGGAGVGKTVTMQELINNIAKAYGGYSVLAGVGERTREGNDLYHEMIESNVNVDPKKN
EEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCHHCCCCHHHHHHHHHCCCCCCCCCC
NGSTEGSKCALVYGQMNEPPGARARVALTGLTQAEYFRDVEGKDVLLFVDNIFRFTQAGA
CCCCCCCEEEEEEECCCCCCCCCEEEEEECCHHHHHHHCCCCCEEEEEHHHHHHHHHCCH
EVSALLGRIPSAVGYQPTLATEMGNLQERITSTNKGSITSVQAIYVPADDLTDPAPATSF
HHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCC
AHLDATTVLSRDIAAQAIFPAVDPLDSTSRIMDPLVIGEEHYQVARRTQEILQQYKALKD
HHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHH
IIAILGMDELSEEDKLTVARARKIQRFLSQPFHVAEQFTNTPGAFVELKDTIRSFKAICD
HHHHHCCHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCEEEHHHHHHHHHHHHC
GEYDHLPEAAFYMVGTIEEAVAKAEKLAAEA
CCHHCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA