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The map label for this gene is ybjT [C]

Identifier: 197103633

GI number: 197103633

Start: 162894

End: 163871

Strand: Reverse

Name: ybjT [C]

Synonym: PHZ_c0167

Alternate gene names: 197103633

Gene position: 163871-162894 (Counterclockwise)

Preceding gene: 197103634

Following gene: 197103631

Centisome position: 4.1

GC content: 73.21

Gene sequence:

>978_bases
ATGCAGAACCTCGTCACCGTCTTCGGCGGATCAGGCTTCGTCGGAACCCAGGTGGTGCGCCAGCTCGCCAAGGCCGGTTG
GCGGATCCGCGTGGCGGTGCGCAACCCGAGCCTGGGCTACGCCATGCGCCTGCACGGCGACGTCGGCCAGATCGACGTCG
TCCAGGCCAACATCCGCGACCGCGATTCCGTGGCCCGGGCGCTGGAGGGCGCGACGGCTTCGGTGAACCTGGTGGGCGTG
CTCTACGAGGCGGGCCGCCAGGGCTTCCAGGCCGTCCACGTCGACGGCGCGCGGACCGTCGCCGAGGTGGCGGCCGCCGA
GGGCGTGACCCGGGTGGTGCAGATGTCCGCCCTGGGCGCCGCCGCGGACAGCGCCTCGAAGTACGCCCGCACGAAGGCCG
AAGGCGAGGCCGCCGTGCGGCAGGTCCGCCCCGACGCCGTGGTCGTGCGCCCCTCGATCGTGTTCGGGCCCGAGGACGGC
TTCTTCAACAAGTTCGCCTCGATGGCCCAGGTCAGCCCGGTGCTGCCGCTGATCGGCGGCGGGACGACGCGGTTCCAGCC
GGTGTTCGTCGGCGACGTCGGCAAGGCGATCGCCCGCATGGTCACCGACAGCGCGGCGGCCGGCCAGACCTACGAGCTGG
GCGGTCAGGCGGTCTTCACCTTCCGCGAGCTGATGCAGCTCATGCTGGCCGAGACGGGCCAGCGCCGCCTGCTGCTGCCC
GTGCCGTTCGGCGTGGCGGGGATGCTGGGCGCGCTGGGCGACGTGATGGCCATGGTGCTGCCGCCGCCGGTCACCTCCGA
CCAGGTGACGCTGCTGCGGAGCGACAACGTGGTCAGCGGCTCGCTGCCGGGCCTGCCCGAGCTCGGGATCACGCCGACGA
CGCTCGAGGCGGTGCTGCCGACCTACCTCTATCGCTACCGCCGGGGCGGCCAGTACGCCGACCAGGAAGCGCGCGCCGTG
GCCGGCGGCCACGCCTGA

Upstream 100 bases:

>100_bases
GGCGGCGCGGCAGAAGGTTTGAAGTCGCATTGCGGCGCGGGGCCGCATCGTCTAATCGGCAGGCTCCCGCGGACCCATTT
TCTTGAGGCGGCCGGCCCAG

Downstream 100 bases:

>100_bases
CGATCCGCTAGCCGATAAACGCCAGGCCCAGCAGGCCCAGGGCGCCGACCGCGATCCGCCACCAGGCGAAGGGCGCGAAG
CCGTGGCGGCCCACGAAGTC

Product: NADH-ubiquinone oxidoreductase 39 kDa subunit precursor

Products: NAD+; ubiquinol

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MQNLVTVFGGSGFVGTQVVRQLAKAGWRIRVAVRNPSLGYAMRLHGDVGQIDVVQANIRDRDSVARALEGATASVNLVGV
LYEAGRQGFQAVHVDGARTVAEVAAAEGVTRVVQMSALGAAADSASKYARTKAEGEAAVRQVRPDAVVVRPSIVFGPEDG
FFNKFASMAQVSPVLPLIGGGTTRFQPVFVGDVGKAIARMVTDSAAAGQTYELGGQAVFTFRELMQLMLAETGQRRLLLP
VPFGVAGMLGALGDVMAMVLPPPVTSDQVTLLRSDNVVSGSLPGLPELGITPTTLEAVLPTYLYRYRRGGQYADQEARAV
AGGHA

Sequences:

>Translated_325_residues
MQNLVTVFGGSGFVGTQVVRQLAKAGWRIRVAVRNPSLGYAMRLHGDVGQIDVVQANIRDRDSVARALEGATASVNLVGV
LYEAGRQGFQAVHVDGARTVAEVAAAEGVTRVVQMSALGAAADSASKYARTKAEGEAAVRQVRPDAVVVRPSIVFGPEDG
FFNKFASMAQVSPVLPLIGGGTTRFQPVFVGDVGKAIARMVTDSAAAGQTYELGGQAVFTFRELMQLMLAETGQRRLLLP
VPFGVAGMLGALGDVMAMVLPPPVTSDQVTLLRSDNVVSGSLPGLPELGITPTTLEAVLPTYLYRYRRGGQYADQEARAV
AGGHA
>Mature_325_residues
MQNLVTVFGGSGFVGTQVVRQLAKAGWRIRVAVRNPSLGYAMRLHGDVGQIDVVQANIRDRDSVARALEGATASVNLVGV
LYEAGRQGFQAVHVDGARTVAEVAAAEGVTRVVQMSALGAAADSASKYARTKAEGEAAVRQVRPDAVVVRPSIVFGPEDG
FFNKFASMAQVSPVLPLIGGGTTRFQPVFVGDVGKAIARMVTDSAAAGQTYELGGQAVFTFRELMQLMLAETGQRRLLLP
VPFGVAGMLGALGDVMAMVLPPPVTSDQVTLLRSDNVVSGSLPGLPELGITPTTLEAVLPTYLYRYRRGGQYADQEARAV
AGGHA

Specific function: Putative nucleotide sugar epimerase/dehydrogenase [H]

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI6681764, Length=305, Percent_Identity=32.7868852459016, Blast_Score=157, Evalue=2e-38,
Organism=Escherichia coli, GI87081793, Length=266, Percent_Identity=21.4285714285714, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17556106, Length=282, Percent_Identity=32.6241134751773, Blast_Score=140, Evalue=6e-34,
Organism=Drosophila melanogaster, GI24667554, Length=333, Percent_Identity=30.9309309309309, Blast_Score=137, Evalue=8e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: 1.6.5.3; 1.6.99.3

Molecular weight: Translated: 34124; Mature: 34124

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNLVTVFGGSGFVGTQVVRQLAKAGWRIRVAVRNPSLGYAMRLHGDVGQIDVVQANIRD
CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCC
RDSVARALEGATASVNLVGVLYEAGRQGFQAVHVDGARTVAEVAAAEGVTRVVQMSALGA
HHHHHHHHCCCCCEEHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCC
AADSASKYARTKAEGEAAVRQVRPDAVVVRPSIVFGPEDGFFNKFASMAQVSPVLPLIGG
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEEECCCCCHHHHHHHHHHHCCCCCEECC
GTTRFQPVFVGDVGKAIARMVTDSAAAGQTYELGGQAVFTFRELMQLMLAETGQRRLLLP
CCCEEEEEEECHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCEEEEE
VPFGVAGMLGALGDVMAMVLPPPVTSDQVTLLRSDNVVSGSLPGLPELGITPTTLEAVLP
CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEECCCCCCCCCCCCHHHHHHHHH
TYLYRYRRGGQYADQEARAVAGGHA
HHHHHHHCCCCCCCHHHHHHCCCCC
>Mature Secondary Structure
MQNLVTVFGGSGFVGTQVVRQLAKAGWRIRVAVRNPSLGYAMRLHGDVGQIDVVQANIRD
CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCC
RDSVARALEGATASVNLVGVLYEAGRQGFQAVHVDGARTVAEVAAAEGVTRVVQMSALGA
HHHHHHHHCCCCCEEHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCC
AADSASKYARTKAEGEAAVRQVRPDAVVVRPSIVFGPEDGFFNKFASMAQVSPVLPLIGG
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEEECCCCCHHHHHHHHHHHCCCCCEECC
GTTRFQPVFVGDVGKAIARMVTDSAAAGQTYELGGQAVFTFRELMQLMLAETGQRRLLLP
CCCEEEEEEECHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCEEEEE
VPFGVAGMLGALGDVMAMVLPPPVTSDQVTLLRSDNVVSGSLPGLPELGITPTTLEAVLP
CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEECCCCCCCCCCCCHHHHHHHHH
TYLYRYRRGGQYADQEARAVAGGHA
HHHHHHHCCCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]