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The map label for this gene is rimM [H]

Identifier: 197103581

GI number: 197103581

Start: 105351

End: 105854

Strand: Reverse

Name: rimM [H]

Synonym: PHZ_c0115

Alternate gene names: 197103581

Gene position: 105854-105351 (Counterclockwise)

Preceding gene: 197103582

Following gene: 197103578

Centisome position: 2.65

GC content: 72.82

Gene sequence:

>504_bases
ATGGGCGACAGCCTGATCCTGGTGGGCCGCGTGGCGGGCGCCTTCGGCGTCCGCGGCGAGGTCCGCCTCACCAGCTACAC
GGCCGAGCCCTCGGCCCTGCTGGACTATCGCGACCTGAAGCGCGAGGACGGCCGGCCCGCCCTCACGCTGCTGTCCGGCC
GCCCTGCGAAGGGCGGCCTTGTCGTGCGCGCTCAGGAAGTGGAGACCCGCGAGCAGGCCGAGGCCCTGCGCGGCCTCAAC
CTCTACATCCCGCGCGACATCCTCCCCGAGCCCGAGGAGGACGAGTTCTACGTCACCGACCTGATCGGCCTGGCCGTCGA
GACGCCGCAGGGCGAGCCGCTGGGCCGGGTCAAGAACGTCCAGGACTTCGGCGCCGGCGACCTCCTGGAGATCGAGCCCC
CCGAGGGCGCCGCCTGGTACCTGCCGTTCACGAAGGAGGCCGTGCCCGAGGTGCGCCTCGCCGAGGGCAAGGTCGTGGCC
GTGCGCCCCGAGGAAACCGAGTAG

Upstream 100 bases:

>100_bases
CGAAGAGGCCCCGGCCGCCGAGGCCGCCGCCGAGGAAGCCGCTCCCGCCGCTGAAGAGGCCGCTCCGGCCGAAGGCGAAG
AGCAGGCCTAAGCGCTCGGG

Downstream 100 bases:

>100_bases
GTCAGGCCTTCGGCTTGCGCATTCGCATCAGGCCTTCCTGGGCGCAGGACGCCACCAGCACCCCGTCCGAGGCCCGGTAG
ATGTAGCCCAGGTTGAAGCC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MGDSLILVGRVAGAFGVRGEVRLTSYTAEPSALLDYRDLKREDGRPALTLLSGRPAKGGLVVRAQEVETREQAEALRGLN
LYIPRDILPEPEEDEFYVTDLIGLAVETPQGEPLGRVKNVQDFGAGDLLEIEPPEGAAWYLPFTKEAVPEVRLAEGKVVA
VRPEETE

Sequences:

>Translated_167_residues
MGDSLILVGRVAGAFGVRGEVRLTSYTAEPSALLDYRDLKREDGRPALTLLSGRPAKGGLVVRAQEVETREQAEALRGLN
LYIPRDILPEPEEDEFYVTDLIGLAVETPQGEPLGRVKNVQDFGAGDLLEIEPPEGAAWYLPFTKEAVPEVRLAEGKVVA
VRPEETE
>Mature_166_residues
GDSLILVGRVAGAFGVRGEVRLTSYTAEPSALLDYRDLKREDGRPALTLLSGRPAKGGLVVRAQEVETREQAEALRGLNL
YIPRDILPEPEEDEFYVTDLIGLAVETPQGEPLGRVKNVQDFGAGDLLEIEPPEGAAWYLPFTKEAVPEVRLAEGKVVAV
RPEETE

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=129, Percent_Identity=26.3565891472868, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 18240; Mature: 18109

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDSLILVGRVAGAFGVRGEVRLTSYTAEPSALLDYRDLKREDGRPALTLLSGRPAKGGL
CCCCEEEEEEECCCCCCCCEEEEEEECCCCCHHHCHHHHHCCCCCCEEEEEECCCCCCCE
VVRAQEVETREQAEALRGLNLYIPRDILPEPEEDEFYVTDLIGLAVETPQGEPLGRVKNV
EEEEHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCHHCCC
QDFGAGDLLEIEPPEGAAWYLPFTKEAVPEVRLAEGKVVAVRPEETE
CCCCCCCEEEEECCCCCEEEECCCHHCCCCEEECCCCEEEECCCCCC
>Mature Secondary Structure 
GDSLILVGRVAGAFGVRGEVRLTSYTAEPSALLDYRDLKREDGRPALTLLSGRPAKGGL
CCCEEEEEEECCCCCCCCEEEEEEECCCCCHHHCHHHHHCCCCCCEEEEEECCCCCCCE
VVRAQEVETREQAEALRGLNLYIPRDILPEPEEDEFYVTDLIGLAVETPQGEPLGRVKNV
EEEEHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCHHCCC
QDFGAGDLLEIEPPEGAAWYLPFTKEAVPEVRLAEGKVVAVRPEETE
CCCCCCCEEEEECCCCCEEEECCCHHCCCCEEECCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]