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The map label for this gene is lcnC [H]

Identifier: 195978309

GI number: 195978309

Start: 1233380

End: 1233613

Strand: Direct

Name: lcnC [H]

Synonym: Sez_1196

Alternate gene names: 195978309

Gene position: 1233380-1233613 (Clockwise)

Preceding gene: 195978293

Following gene: 195978310

Centisome position: 60.93

GC content: 38.03

Gene sequence:

>234_bases
TTGTCAGATTACCATTTAGGACGTTTCGATAACCAATATCTGCCTCAACAAGCTTATATTTTTAGTGGATCAATTTTAGA
AAATCTTACTCTCGGTGCAAACCAAGCGATTGCTCAAGAGGGTATTATCAATGTCTGTGATATGGCAGAAATTAGAGAAG
ATATTGAACAAATGCCTATGGGCTATCTGATGGGGCAGGATTGTCTGGTGGACAAAAACAGAGAATCTCATTAG

Upstream 100 bases:

>100_bases
AATTTGTTCTCCATTTCCTAAACAGTCATCGAAACGTCCTAAATGGGAAAAATTTACCGCTTAAGACTTAAATTCAACCG
TTTGAGATAATTTGATAGAT

Downstream 100 bases:

>100_bases
CTAGAGCATTATTAACCAAGTCTCCTATTCTAATTCTCGATGAGGCGACAAGCGGACTAGATGTCTTAACGGAGAAAAAA
GTGATTGATAACCTAATGTC

Product: lactococcin transport/processing ATP-binding protein LcnC-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 77; Mature: 76

Protein sequence:

>77_residues
MSDYHLGRFDNQYLPQQAYIFSGSILENLTLGANQAIAQEGIINVCDMAEIREDIEQMPMGYLMGQDCLVDKNRESH

Sequences:

>Translated_77_residues
MSDYHLGRFDNQYLPQQAYIFSGSILENLTLGANQAIAQEGIINVCDMAEIREDIEQMPMGYLMGQDCLVDKNRESH
>Mature_76_residues
SDYHLGRFDNQYLPQQAYIFSGSILENLTLGANQAIAQEGIINVCDMAEIREDIEQMPMGYLMGQDCLVDKNRESH

Specific function: Involved in the export process of a bacteriocin lactococcin [H]

COG id: COG2274

COG function: function code V; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 peptidase C39 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR001140
- InterPro:   IPR011527
- InterPro:   IPR003593
- InterPro:   IPR005897
- InterPro:   IPR005074 [H]

Pfam domain/function: PF00664 ABC_membrane; PF00005 ABC_tran; PF03412 Peptidase_C39 [H]

EC number: NA

Molecular weight: Translated: 8755; Mature: 8624

Theoretical pI: Translated: 4.04; Mature: 4.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
6.5 %Met     (Translated Protein)
9.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDYHLGRFDNQYLPQQAYIFSGSILENLTLGANQAIAQEGIINVCDMAEIREDIEQMPM
CCCCCCCCCCCCCCCCCCEEECCHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCC
GYLMGQDCLVDKNRESH
CHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDYHLGRFDNQYLPQQAYIFSGSILENLTLGANQAIAQEGIINVCDMAEIREDIEQMPM
CCCCCCCCCCCCCCCCCEEECCHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCC
GYLMGQDCLVDKNRESH
CHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]