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The map label for this gene is rfbA [H]

Identifier: 195977968

GI number: 195977968

Start: 883740

End: 884543

Strand: Direct

Name: rfbA [H]

Synonym: Sez_0840

Alternate gene names: 195977968

Gene position: 883740-884543 (Clockwise)

Preceding gene: 195977967

Following gene: 195977969

Centisome position: 43.66

GC content: 40.05

Gene sequence:

>804_bases
ATGGAATTATTGAGTAAAAAGAATCGTATTCTTTTGAAAGAGCTTGTTAAAACAGACTTTAAACTAAGGTATCAGGGCAG
TGCCATTGGTTATTTGTGGTCTATCTTAAAGCCTTTGATGATGTTTACCATCATGTATTTGGTGTTTATCAGGTTTTTGC
GAACTGGTGGTGATGTTCCTCATTTTCCGGTTGCTCTCTTACTTGCCAATGTGATTTGGTCTTTTTTCTCAGAAGCAACC
AGTATGGGAATGGTCTCTATCGTGTCGCGAGGAGACCTGCTTAGAAAATTGAATTTTTCAAAGCATACCATTGTTTTTTC
AGCGGTTTTGGGAGCATTGATTAACTTTTCAATCAACCTATTAGTGGTTTTGGTTTTTGCAGCTATCAATGGGGTTACTC
TGTCTCCTCACGCTTATCTGGCCTTACCACTCTTTGTTGAGCTGGCTGTTCTTACAGTTGGTGTGGCCTTGATGCTTTCC
ACCGTCTTTGTTTATTATCGTGATTTGGCTCAGGTTTGGGAGGTTCTATTGCAGTCAGGTATGTACGTGACCCCCATCAT
CTACCCGATTACCTTTGTGTTTGACCGACACCCTCTTGCTGCCAAGATATTGATGCTTAATCCTTTAGCACAGATTATTC
AAGACTTGCGGTATCTGCTGATTGACAGAGCGAATGTAACGATTTGGCAAATGTCTACAAATTGGTGCTATATCATCATT
CCTTACCTCATTCCATTTGTCCTATTAGCACTTGGGGTAGCAGTGTTTAATAAAAATGCTAAGAAGTTTGCGGAGATTAT
CTAA

Upstream 100 bases:

>100_bases
CTGATTTAAAGGCTTATGGCTTTCGGAAAAATCGTGCCTTTCATACCCTTGTTTTTATGGCATTGATGATGACCAAATTT
GGCTATAGGAGAAAAGAATA

Downstream 100 bases:

>100_bases
TGGCTAATAAAGAAATTGCAGTAACAGTTGATCATGTCAGTAAGTCCTTTAAGCTGCCAACAGAGGCAACCAAGAGCTTT
CGTACTGCTCTTGTTAACCG

Product: rhamnose-containing polysacharide translocation permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MELLSKKNRILLKELVKTDFKLRYQGSAIGYLWSILKPLMMFTIMYLVFIRFLRTGGDVPHFPVALLLANVIWSFFSEAT
SMGMVSIVSRGDLLRKLNFSKHTIVFSAVLGALINFSINLLVVLVFAAINGVTLSPHAYLALPLFVELAVLTVGVALMLS
TVFVYYRDLAQVWEVLLQSGMYVTPIIYPITFVFDRHPLAAKILMLNPLAQIIQDLRYLLIDRANVTIWQMSTNWCYIII
PYLIPFVLLALGVAVFNKNAKKFAEII

Sequences:

>Translated_267_residues
MELLSKKNRILLKELVKTDFKLRYQGSAIGYLWSILKPLMMFTIMYLVFIRFLRTGGDVPHFPVALLLANVIWSFFSEAT
SMGMVSIVSRGDLLRKLNFSKHTIVFSAVLGALINFSINLLVVLVFAAINGVTLSPHAYLALPLFVELAVLTVGVALMLS
TVFVYYRDLAQVWEVLLQSGMYVTPIIYPITFVFDRHPLAAKILMLNPLAQIIQDLRYLLIDRANVTIWQMSTNWCYIII
PYLIPFVLLALGVAVFNKNAKKFAEII
>Mature_267_residues
MELLSKKNRILLKELVKTDFKLRYQGSAIGYLWSILKPLMMFTIMYLVFIRFLRTGGDVPHFPVALLLANVIWSFFSEAT
SMGMVSIVSRGDLLRKLNFSKHTIVFSAVLGALINFSINLLVVLVFAAINGVTLSPHAYLALPLFVELAVLTVGVALMLS
TVFVYYRDLAQVWEVLLQSGMYVTPIIYPITFVFDRHPLAAKILMLNPLAQIIQDLRYLLIDRANVTIWQMSTNWCYIII
PYLIPFVLLALGVAVFNKNAKKFAEII

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30254; Mature: 30254

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLSKKNRILLKELVKTDFKLRYQGSAIGYLWSILKPLMMFTIMYLVFIRFLRTGGDVP
CCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
HFPVALLLANVIWSFFSEATSMGMVSIVSRGDLLRKLNFSKHTIVFSAVLGALINFSINL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LVVLVFAAINGVTLSPHAYLALPLFVELAVLTVGVALMLSTVFVYYRDLAQVWEVLLQSG
HHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
MYVTPIIYPITFVFDRHPLAAKILMLNPLAQIIQDLRYLLIDRANVTIWQMSTNWCYIII
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEH
PYLIPFVLLALGVAVFNKNAKKFAEII
HHHHHHHHHHHHHHHHCCCHHHHHHCC
>Mature Secondary Structure
MELLSKKNRILLKELVKTDFKLRYQGSAIGYLWSILKPLMMFTIMYLVFIRFLRTGGDVP
CCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
HFPVALLLANVIWSFFSEATSMGMVSIVSRGDLLRKLNFSKHTIVFSAVLGALINFSINL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LVVLVFAAINGVTLSPHAYLALPLFVELAVLTVGVALMLSTVFVYYRDLAQVWEVLLQSG
HHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
MYVTPIIYPITFVFDRHPLAAKILMLNPLAQIIQDLRYLLIDRANVTIWQMSTNWCYIII
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEH
PYLIPFVLLALGVAVFNKNAKKFAEII
HHHHHHHHHHHHHHHHCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7533882 [H]