Click here to switch to the map view.

The map label for this gene is atpD [H]

Identifier: 195977927

GI number: 195977927

Start: 831438

End: 832844

Strand: Direct

Name: atpD [H]

Synonym: Sez_0798

Alternate gene names: 195977927

Gene position: 831438-832844 (Clockwise)

Preceding gene: 195977926

Following gene: 195977928

Centisome position: 41.08

GC content: 46.13

Gene sequence:

>1407_bases
ATGAGCTCAGGCAAAATTGCTCAGGTTGTTGGTCCAGTTGTAGACGTTGTGTTTGCGAGTGGGGACAAACTACCAGAGAT
TAATAATGCGTTGATAGTTTATAAAGATGGCGATAAAAAGCAAAAAATCGTTCTCGAGGTTGCCCTAGAGCTTGGAGACG
GTATGGTACGTACAATCGCTATGGAATCAACCGATGGGCTTACACGTGGATTAGAGGTTCTTGATACTGGTCGTGCCATT
AGTGTACCAGTTGGTAAAGAGACTCTAGGTCGTGTTTTCAACGTTCTTGGTGAAACCATCGACCTAGAAGCACCATTTGC
AGATGATGTTAATCGTGAACCGATCCATAAAAAAGCACCAGCCTTTGATGAATTGTCAACATCATCAGAAATTCTTGAAA
CAGGTATCAAGGTTATTGACCTGCTTGCCCCTTACTTAAAGGGTGGTAAGGTCGGTCTTTTCGGTGGTGCCGGAGTTGGT
AAAACCGTTCTTATCCAAGAATTAATCCACAATATCGCTCAAGAGCATGGTGGGATCTCGGTATTTACCGGTGTTGGTGA
GCGTACGCGTGAAGGAAATGACCTTTACTGGGAAATGAAGGAATCAGGCGTTATTGAAAAAACAGCCATGGTTTTTGGTC
AGATGAATGAACCACCAGGAGCCCGCATGCGCGTTGCCTTGACTGGCTTGACAATTGCTGAATATTTCCGCGATGTTGAA
GGCCAAGACGTCTTGCTCTTTATTGACAATATCTTCCGTTTTACTCAGGCAGGCTCAGAGGTATCAGCCCTTCTAGGTCG
TATGCCTTCAGCTGTTGGTTATCAGCCAACACTTGCCACTGAAATGGGACAATTGCAAGAGCGTATCACGTCAACGAAAA
AAGGCTCTGTTACCTCTATCCAAGCCATCTACGTGCCAGCTGATGACTACACTGACCCAGCGCCAGCAACAGCATTTGCT
CACTTGGATTCAACAACTAACCTTGAGCGTAAGCTGACACAGATGGGGATTTACCCGGCGGTTGATCCACTGGCTTCAAG
CTCGCGTGCGTTATCACCGGAAATTGTTGGTGAGGAGCACTATGCAGTAGCTACAGAGGTTCAGCGTGTCTTGCAGCGCT
ATCGTGAATTGCAGGATATCATTGCTATCTTAGGTATGGACGAGCTATCAGAAGAAGAAAAGACATTGGTAGGGCGTGCG
CGTCGTATCCAGTTCTTCTTGTCGCAAAACTTTAATGTTGCAGAACAGTTTACAGGCCTTCCTGGCTCTTATGTTCCAGT
TGCCGAAACCGTTCGTGGTTTCAAGGAAATCCTCGAAGGAAAGCATGACCACCTTCCAGAAGATGCCTTTCGTGCTGTTG
GACCAATTGAGGACGTGATCGAAAAAGCTAAGAAAATGGGCTTTTAG

Upstream 100 bases:

>100_bases
TGACATTTGGGATTAATGAGCTAGGGGCCTTTTACCCTTAGCTACTCGAATTTAGAAAAATTCAGCTTAATCCCCTACTA
TCGAATATAAGGAGAAAAAC

Downstream 100 bases:

>100_bases
TGAGGTGATGCCATGACACAAATGACTGTTCAGGTGGTTACGCCAGATGGTATCAAATACGATCATCATGCTAAGTTCAT
CTCAGTAACGACACCAGATG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MSSGKIAQVVGPVVDVVFASGDKLPEINNALIVYKDGDKKQKIVLEVALELGDGMVRTIAMESTDGLTRGLEVLDTGRAI
SVPVGKETLGRVFNVLGETIDLEAPFADDVNREPIHKKAPAFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVG
KTVLIQELIHNIAQEHGGISVFTGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVE
GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTSIQAIYVPADDYTDPAPATAFA
HLDSTTNLERKLTQMGIYPAVDPLASSSRALSPEIVGEEHYAVATEVQRVLQRYRELQDIIAILGMDELSEEEKTLVGRA
RRIQFFLSQNFNVAEQFTGLPGSYVPVAETVRGFKEILEGKHDHLPEDAFRAVGPIEDVIEKAKKMGF

Sequences:

>Translated_468_residues
MSSGKIAQVVGPVVDVVFASGDKLPEINNALIVYKDGDKKQKIVLEVALELGDGMVRTIAMESTDGLTRGLEVLDTGRAI
SVPVGKETLGRVFNVLGETIDLEAPFADDVNREPIHKKAPAFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVG
KTVLIQELIHNIAQEHGGISVFTGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVE
GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTSIQAIYVPADDYTDPAPATAFA
HLDSTTNLERKLTQMGIYPAVDPLASSSRALSPEIVGEEHYAVATEVQRVLQRYRELQDIIAILGMDELSEEEKTLVGRA
RRIQFFLSQNFNVAEQFTGLPGSYVPVAETVRGFKEILEGKHDHLPEDAFRAVGPIEDVIEKAKKMGF
>Mature_467_residues
SSGKIAQVVGPVVDVVFASGDKLPEINNALIVYKDGDKKQKIVLEVALELGDGMVRTIAMESTDGLTRGLEVLDTGRAIS
VPVGKETLGRVFNVLGETIDLEAPFADDVNREPIHKKAPAFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVGK
TVLIQELIHNIAQEHGGISVFTGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEG
QDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTSIQAIYVPADDYTDPAPATAFAH
LDSTTNLERKLTQMGIYPAVDPLASSSRALSPEIVGEEHYAVATEVQRVLQRYRELQDIIAILGMDELSEEEKTLVGRAR
RIQFFLSQNFNVAEQFTGLPGSYVPVAETVRGFKEILEGKHDHLPEDAFRAVGPIEDVIEKAKKMGF

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=471, Percent_Identity=67.3036093418259, Blast_Score=622, Evalue=1e-178,
Organism=Homo sapiens, GI19913424, Length=319, Percent_Identity=28.2131661442006, Blast_Score=125, Evalue=6e-29,
Organism=Homo sapiens, GI19913428, Length=412, Percent_Identity=24.2718446601942, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI19913426, Length=417, Percent_Identity=24.7002398081535, Blast_Score=102, Evalue=9e-22,
Organism=Homo sapiens, GI50345984, Length=395, Percent_Identity=26.5822784810127, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI4757810, Length=395, Percent_Identity=26.5822784810127, Blast_Score=98, Evalue=2e-20,
Organism=Escherichia coli, GI1790170, Length=466, Percent_Identity=65.8798283261803, Blast_Score=609, Evalue=1e-175,
Organism=Escherichia coli, GI1788251, Length=394, Percent_Identity=28.1725888324873, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1790172, Length=350, Percent_Identity=28, Blast_Score=114, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI25144756, Length=471, Percent_Identity=64.968152866242, Blast_Score=601, Evalue=1e-172,
Organism=Caenorhabditis elegans, GI17565854, Length=321, Percent_Identity=30.2180685358255, Blast_Score=133, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI17570191, Length=409, Percent_Identity=24.2053789731051, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17510931, Length=337, Percent_Identity=24.3323442136499, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI71988063, Length=363, Percent_Identity=26.1707988980716, Blast_Score=95, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI71988080, Length=363, Percent_Identity=26.1707988980716, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71988074, Length=391, Percent_Identity=24.2966751918159, Blast_Score=81, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322581, Length=463, Percent_Identity=69.1144708423326, Blast_Score=625, Evalue=1e-180,
Organism=Saccharomyces cerevisiae, GI6319603, Length=418, Percent_Identity=25.8373205741627, Blast_Score=114, Evalue=4e-26,
Organism=Saccharomyces cerevisiae, GI6319370, Length=378, Percent_Identity=28.042328042328, Blast_Score=103, Evalue=5e-23,
Organism=Saccharomyces cerevisiae, GI6320016, Length=263, Percent_Identity=25.8555133079848, Blast_Score=86, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24638766, Length=470, Percent_Identity=67.2340425531915, Blast_Score=620, Evalue=1e-178,
Organism=Drosophila melanogaster, GI28574560, Length=469, Percent_Identity=64.6055437100213, Blast_Score=582, Evalue=1e-166,
Organism=Drosophila melanogaster, GI20129479, Length=373, Percent_Identity=26.5415549597855, Blast_Score=134, Evalue=1e-31,
Organism=Drosophila melanogaster, GI24583988, Length=354, Percent_Identity=27.9661016949153, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI24583986, Length=354, Percent_Identity=27.9661016949153, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI24583984, Length=354, Percent_Identity=27.9661016949153, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI24583992, Length=369, Percent_Identity=28.1842818428184, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI281361666, Length=405, Percent_Identity=24.1975308641975, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24646341, Length=405, Percent_Identity=24.1975308641975, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI17136796, Length=405, Percent_Identity=24.1975308641975, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24658560, Length=364, Percent_Identity=27.1978021978022, Blast_Score=96, Evalue=7e-20,
Organism=Drosophila melanogaster, GI24638768, Length=96, Percent_Identity=55.2083333333333, Blast_Score=93, Evalue=5e-19,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50900; Mature: 50769

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSGKIAQVVGPVVDVVFASGDKLPEINNALIVYKDGDKKQKIVLEVALELGDGMVRTIA
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
MESTDGLTRGLEVLDTGRAISVPVGKETLGRVFNVLGETIDLEAPFADDVNREPIHKKAP
ECCCCCHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHCCC
AFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEHGGIS
CHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEE
VFTGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVE
EEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHCCC
GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTSI
CCEEEEEHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEE
QAIYVPADDYTDPAPATAFAHLDSTTNLERKLTQMGIYPAVDPLASSSRALSPEIVGEEH
EEEEECCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCH
YAVATEVQRVLQRYRELQDIIAILGMDELSEEEKTLVGRARRIQFFLSQNFNVAEQFTGL
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCC
PGSYVPVAETVRGFKEILEGKHDHLPEDAFRAVGPIEDVIEKAKKMGF
CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SSGKIAQVVGPVVDVVFASGDKLPEINNALIVYKDGDKKQKIVLEVALELGDGMVRTIA
CCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
MESTDGLTRGLEVLDTGRAISVPVGKETLGRVFNVLGETIDLEAPFADDVNREPIHKKAP
ECCCCCHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHCCC
AFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEHGGIS
CHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEE
VFTGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVE
EEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHCCC
GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTSI
CCEEEEEHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEE
QAIYVPADDYTDPAPATAFAHLDSTTNLERKLTQMGIYPAVDPLASSSRALSPEIVGEEH
EEEEECCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCH
YAVATEVQRVLQRYRELQDIIAILGMDELSEEEKTLVGRARRIQFFLSQNFNVAEQFTGL
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCC
PGSYVPVAETVRGFKEILEGKHDHLPEDAFRAVGPIEDVIEKAKKMGF
CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA