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The map label for this gene is yvoA [H]

Identifier: 195977869

GI number: 195977869

Start: 770066

End: 770794

Strand: Direct

Name: yvoA [H]

Synonym: Sez_0737

Alternate gene names: 195977869

Gene position: 770066-770794 (Clockwise)

Preceding gene: 195977868

Following gene: 195977870

Centisome position: 38.04

GC content: 40.6

Gene sequence:

>729_bases
ATGATAAAGGAGCAGCCACTCTACTTACAAATTGTTGATGTATTAGAGGTCAAAATTAGAAATACCATGTCAGCTAATGA
TAAATTGTTGTCCGAACGAGAGCTAAGTGACTTATTTGGTGTTAGTCGGATAACTATCAGATTGGCACTTAAGGAGCTAG
AACTGCGTGGGCTTATTTACAAACAGCAGGGCAAGGGGACCTATGTATCTGGCATAAAGGAGCCTGCTACAGACCTGTCC
TCAGCCTATAGCTTTACCGAGGAGATGAAAAAGCAAGGTCGTAAGCCTCAAACAGTCATTCTTTCATTTGAAAAGATCAA
GACCACAGCTTACTTGTCTGGTATGTTAGATTTAGATGTTGATACTGATGTTTTTGAGCTAGAGCGTCTAAGGATTGCAG
ATGGAAAGCCATTAATGTTTGAGCGTACTTATATACCTGAAAGGGGATTTGAGGGGCTAACCAGTGATTTATTGGAAAAA
AAGCCCTTATATGATGTGTTTGCTGAGGATTTTCAGGAAGCTATCCGATTGGCTGATGAGGAGTTTTACGCTAGTATCGC
TCTAGATTATGAAGCAAAGCTATTAGGGATCAAAAAGGGAGATCCTGTGCTGCATATTATGCGCAAGACCTATAATGAGA
AAAATAGGCTAATCGAATTTACCTTTAGCATTGCTAGAGCAGACCAGTTTAGGTACCGTATCCAGCACCACCCTAGCAAG
AAGATATAG

Upstream 100 bases:

>100_bases
ATTAATATGTGAAATATTTTAATATTTTTCAAAAAAGTGTTGACTTTTAAGCTGTAATATAATATCACTTAAGTGGTTAT
AACAAGTTAGGGGTATTAGT

Downstream 100 bases:

>100_bases
GAGGCAAGAGAATGTTTACAAAAACACAAGCAGAATTAGAGCTACTTGGCGCAGCTATCACCACTAGAGAAATCAAGCAG
CAGCCAGAGCTATGGTCTGA

Product: transcriptional regulator GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MIKEQPLYLQIVDVLEVKIRNTMSANDKLLSERELSDLFGVSRITIRLALKELELRGLIYKQQGKGTYVSGIKEPATDLS
SAYSFTEEMKKQGRKPQTVILSFEKIKTTAYLSGMLDLDVDTDVFELERLRIADGKPLMFERTYIPERGFEGLTSDLLEK
KPLYDVFAEDFQEAIRLADEEFYASIALDYEAKLLGIKKGDPVLHIMRKTYNEKNRLIEFTFSIARADQFRYRIQHHPSK
KI

Sequences:

>Translated_242_residues
MIKEQPLYLQIVDVLEVKIRNTMSANDKLLSERELSDLFGVSRITIRLALKELELRGLIYKQQGKGTYVSGIKEPATDLS
SAYSFTEEMKKQGRKPQTVILSFEKIKTTAYLSGMLDLDVDTDVFELERLRIADGKPLMFERTYIPERGFEGLTSDLLEK
KPLYDVFAEDFQEAIRLADEEFYASIALDYEAKLLGIKKGDPVLHIMRKTYNEKNRLIEFTFSIARADQFRYRIQHHPSK
KI
>Mature_242_residues
MIKEQPLYLQIVDVLEVKIRNTMSANDKLLSERELSDLFGVSRITIRLALKELELRGLIYKQQGKGTYVSGIKEPATDLS
SAYSFTEEMKKQGRKPQTVILSFEKIKTTAYLSGMLDLDVDTDVFELERLRIADGKPLMFERTYIPERGFEGLTSDLLEK
KPLYDVFAEDFQEAIRLADEEFYASIALDYEAKLLGIKKGDPVLHIMRKTYNEKNRLIEFTFSIARADQFRYRIQHHPSK
KI

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=234, Percent_Identity=27.7777777777778, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786950, Length=229, Percent_Identity=27.5109170305677, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1790118, Length=232, Percent_Identity=25, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI87082252, Length=213, Percent_Identity=25.3521126760563, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28044; Mature: 28044

Theoretical pI: Translated: 6.83; Mature: 6.83

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKEQPLYLQIVDVLEVKIRNTMSANDKLLSERELSDLFGVSRITIRLALKELELRGLIY
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
KQQGKGTYVSGIKEPATDLSSAYSFTEEMKKQGRKPQTVILSFEKIKTTAYLSGMLDLDV
EECCCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHCEEECCC
DTDVFELERLRIADGKPLMFERTYIPERGFEGLTSDLLEKKPLYDVFAEDFQEAIRLADE
CCCHHHHHHEEECCCCCEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
EFYASIALDYEAKLLGIKKGDPVLHIMRKTYNEKNRLIEFTFSIARADQFRYRIQHHPSK
HHHEEEEECCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHCCCCC
KI
CC
>Mature Secondary Structure
MIKEQPLYLQIVDVLEVKIRNTMSANDKLLSERELSDLFGVSRITIRLALKELELRGLIY
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
KQQGKGTYVSGIKEPATDLSSAYSFTEEMKKQGRKPQTVILSFEKIKTTAYLSGMLDLDV
EECCCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHCEEECCC
DTDVFELERLRIADGKPLMFERTYIPERGFEGLTSDLLEKKPLYDVFAEDFQEAIRLADE
CCCHHHHHHEEECCCCCEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
EFYASIALDYEAKLLGIKKGDPVLHIMRKTYNEKNRLIEFTFSIARADQFRYRIQHHPSK
HHHEEEEECCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHCCCCC
KI
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]