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The map label for this gene is cas1

Identifier: 195977694

GI number: 195977694

Start: 579902

End: 580927

Strand: Direct

Name: cas1

Synonym: Sez_0553

Alternate gene names: NA

Gene position: 579902-580927 (Clockwise)

Preceding gene: 195977693

Following gene: 195977695

Centisome position: 28.65

GC content: 43.66

Gene sequence:

>1026_bases
ATGAAAAAGCTTTTAAACACCCTCTACCTGACTCAGGAAGATTATTATATCACCAAAGAGGGAGACAATATTGTTATCAA
ACAAGATGGGAAAACGGTATCGCGGTTTCCGTTTCGTATCATTGATGGGGTGGTGTGTTTTTCTTACCTGGGTGCTTCGC
CTGCCTTGATTAAGCTCTGTACGGAGAATCAGATTAATTTGTCCTTTCATACGCCTCAGGGCCGTTTTTGTGGTCGTTAT
GTTGGTGCGACAAATGGTAATGTGCTGTTGCGACGAGAGCACTATCGTTTAGCAGATCGCGATGAGTCCTTGGAGTATGC
CAAGCGGTTTATTTTAGCAAAAATATCAAATGCTAGGAAATACTTGCTTCACTTTAGGCGTGACCATCGAGATCAGATTG
ATGGCAAGCTTTTTGAAGAGGTCAATGGTGAGCTGATCTGGGCACTTGAGATGGTGCAGGCAACAGATAATAAGGATTCT
CTTCGCGGCATTGAAGGTCAAGCTGCCAACCAGTACTTCCGTATTTTCAATGATTTGGTGTTAACGGATAAGAAGGCCTT
TACCTTTGGTGGTCGCAGTAAGAGACCTCCCTTGGATCGTGTGAATGCCCTTTTATCTTTTGGCTACAGTTTGCTGACCT
TTGAATGTCAGTCGGCCTTAGAGGCGGTCAGCTTGGATAGCTATGTTGGCTTTTTTCATACGGATAGGCCGGGTCGCGCT
AGTCTTGCCTTGGATTTGGTAGAGGAATTTCGTTCCTATATTATTGATCGTTTTGTGTTTTCATTGATTAATAAAGGACA
GCTGACAAAGAAGCATTTTGATGTTAAGGAGAGTGGCAGTATTTTGCTAACAGAAAAGGGACGTGTGACATTTATTGAGC
TGTGGCAAAAGCGTAAGCACATGGAGGTAGAGCACCCGTTTACAAAAGAAAAGGTCAAGCTAATGCTCCTGCCTTATGTG
CAAGCCCAGCTCCTTGCTAAGGCTATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAG

Upstream 100 bases:

>100_bases
AGCTATGTTCTTTAGTAGAGGTGTGTAAGCCGCGTATCAGCAAGAAGGTGCGAAATGTTGATCGTTATATAGCAGCTGCT
ATGGTTAGTGAGGAAATCAT

Downstream 100 bases:

>100_bases
GAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAG
CAAAATTGTGTGTTGATTAT

Product: CRISPR-associated protein Cas1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MKKLLNTLYLTQEDYYITKEGDNIVIKQDGKTVSRFPFRIIDGVVCFSYLGASPALIKLCTENQINLSFHTPQGRFCGRY
VGATNGNVLLRREHYRLADRDESLEYAKRFILAKISNARKYLLHFRRDHRDQIDGKLFEEVNGELIWALEMVQATDNKDS
LRGIEGQAANQYFRIFNDLVLTDKKAFTFGGRSKRPPLDRVNALLSFGYSLLTFECQSALEAVSLDSYVGFFHTDRPGRA
SLALDLVEEFRSYIIDRFVFSLINKGQLTKKHFDVKESGSILLTEKGRVTFIELWQKRKHMEVEHPFTKEKVKLMLLPYV
QAQLLAKAIRGDIDSYPPFMI

Sequences:

>Translated_341_residues
MKKLLNTLYLTQEDYYITKEGDNIVIKQDGKTVSRFPFRIIDGVVCFSYLGASPALIKLCTENQINLSFHTPQGRFCGRY
VGATNGNVLLRREHYRLADRDESLEYAKRFILAKISNARKYLLHFRRDHRDQIDGKLFEEVNGELIWALEMVQATDNKDS
LRGIEGQAANQYFRIFNDLVLTDKKAFTFGGRSKRPPLDRVNALLSFGYSLLTFECQSALEAVSLDSYVGFFHTDRPGRA
SLALDLVEEFRSYIIDRFVFSLINKGQLTKKHFDVKESGSILLTEKGRVTFIELWQKRKHMEVEHPFTKEKVKLMLLPYV
QAQLLAKAIRGDIDSYPPFMI
>Mature_341_residues
MKKLLNTLYLTQEDYYITKEGDNIVIKQDGKTVSRFPFRIIDGVVCFSYLGASPALIKLCTENQINLSFHTPQGRFCGRY
VGATNGNVLLRREHYRLADRDESLEYAKRFILAKISNARKYLLHFRRDHRDQIDGKLFEEVNGELIWALEMVQATDNKDS
LRGIEGQAANQYFRIFNDLVLTDKKAFTFGGRSKRPPLDRVNALLSFGYSLLTFECQSALEAVSLDSYVGFFHTDRPGRA
SLALDLVEEFRSYIIDRFVFSLINKGQLTKKHFDVKESGSILLTEKGRVTFIELWQKRKHMEVEHPFTKEKVKLMLLPYV
QAQLLAKAIRGDIDSYPPFMI

Specific function: Unknown

COG id: COG1518

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002729
- InterPro:   IPR019858 [H]

Pfam domain/function: PF01867 DUF48 [H]

EC number: NA

Molecular weight: Translated: 39375; Mature: 39375

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLLNTLYLTQEDYYITKEGDNIVIKQDGKTVSRFPFRIIDGVVCFSYLGASPALIKLC
CHHHHHHHHCCCCCEEEEECCCEEEEEECCCCHHHCCHHHHHHHHHHHHHCCCCCEEEEE
TENQINLSFHTPQGRFCGRYVGATNGNVLLRREHYRLADRDESLEYAKRFILAKISNARK
CCCCEEEEEECCCCCCCHHEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
YLLHFRRDHRDQIDGKLFEEVNGELIWALEMVQATDNKDSLRGIEGQAANQYFRIFNDLV
HHHHHHHHHHHHHCHHHHHHCCCCEEEEEEEHHHCCCHHHHCCCCCHHHHHHHHHHHHHH
LTDKKAFTFGGRSKRPPLDRVNALLSFGYSLLTFECQSALEAVSLDSYVGFFHTDRPGRA
HCCCCEEEECCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCH
SLALDLVEEFRSYIIDRFVFSLINKGQLTKKHFDVKESGSILLTEKGRVTFIELWQKRKH
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHC
MEVEHPFTKEKVKLMLLPYVQAQLLAKAIRGDIDSYPPFMI
CCCCCCCCHHHEEEEEHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKKLLNTLYLTQEDYYITKEGDNIVIKQDGKTVSRFPFRIIDGVVCFSYLGASPALIKLC
CHHHHHHHHCCCCCEEEEECCCEEEEEECCCCHHHCCHHHHHHHHHHHHHCCCCCEEEEE
TENQINLSFHTPQGRFCGRYVGATNGNVLLRREHYRLADRDESLEYAKRFILAKISNARK
CCCCEEEEEECCCCCCCHHEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
YLLHFRRDHRDQIDGKLFEEVNGELIWALEMVQATDNKDSLRGIEGQAANQYFRIFNDLV
HHHHHHHHHHHHHCHHHHHHCCCCEEEEEEEHHHCCCHHHHCCCCCHHHHHHHHHHHHHH
LTDKKAFTFGGRSKRPPLDRVNALLSFGYSLLTFECQSALEAVSLDSYVGFFHTDRPGRA
HCCCCEEEECCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCH
SLALDLVEEFRSYIIDRFVFSLINKGQLTKKHFDVKESGSILLTEKGRVTFIELWQKRKH
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHC
MEVEHPFTKEKVKLMLLPYVQAQLLAKAIRGDIDSYPPFMI
CCCCCCCCHHHEEEEEHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]