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The map label for this gene is cas3

Identifier: 195977689

GI number: 195977689

Start: 573087

End: 575540

Strand: Direct

Name: cas3

Synonym: Sez_0548

Alternate gene names: NA

Gene position: 573087-575540 (Clockwise)

Preceding gene: 195977688

Following gene: 195977690

Centisome position: 28.31

GC content: 41.08

Gene sequence:

>2454_bases
ATGATATTGGCTCACTATCAAGGCAAAACAGATTTGGAGCCTGCAAAAGAGCAATCGCTAGAGGAGCATTCTTTTCAAGT
GGCTGAACTAGCAAGGACTGCAGCGACTTCTATTAAACAAGGAGATTTACTATTTTTACTGGGGCTTTTTCATGACTTGG
GTAAGGCCGGGTACAGATTTCAAGAAAAGCTATTGAAAAAGCCTAATAGTCATGTTGATCACGCTTACGCCGGTGCACGC
TACCTTTATGATGAGATTGGTAAGATTTTACTAGGCCATGTTCAGCAATATCCGCATAGTAAGTCATTAGTGCTTTATTT
TAGAGATATTGTAGCTTATGTTATTTCAGCGCATCATGGCATGTATGACTTGCGAATGACAGAGCCAGCTGAGGAGGCTA
GTCGATTTGCCTATAATAAGCTATTGCATCGTATGTTTCAAGAAAGGCCTGGTTATCACTACCAAAAGGATGTCTTTACT
TTTGTGGAAGTCCTTGAGCAATCATTGCCCCGTTATGGCTATGATCATTTAGCGGATCTAATAACACGCGCTTTTTACAA
TTTTCAGTTGGCATGGGATAAGCTGGATATGGCAGATAGCAGTGAACAGGATTACTATAGCGGCTGCTTTGTCCGACTCT
ACCTATCACTTCTAAAAAATGCTGATGTTTTAGATACGATAAATGCTTATGAGACGGTGATAGAGCCTTTAACAGAAGAA
AAGCAAGAAGAGCTGCGCATCTCCTATCTTGAAGCTGTTGAAAGTCTATACGCTAGCTTTGGCCAGTCAAAGCTAAGATT
AAATGCTATTCGCAATAAGCTTGCTGAGCGTGTCAAAGGTCGTGGCAGAGAGGATTCGACAGGGATCTACCGTTTGAATT
TACCGACAGGAGCAGGTAAAACAAACTTGAGCCTACGTTATGCAACTCATCAGATGGTCTATCAGCAAAAGAAGCACTTT
TTGTACGTGACGCCTTTTTTATCGGTTTTGGAGCAAAATGCTCTTGCAATGAAGCAGGTTATTGGTGAGGAAGGTGTCTT
AGAGCACCACTCAAACGTGGTACGAGAAATAGACAATACCAATCAAAATAATGATGATGCAGACGAGGATAGAGACAGCT
TACGGCGAGAATATTTGATTGACAGCTGGGATAGTCCGGTGGTATTGACGTCAATGGTCCAATTTTTCCAGACCTTATTT
AAAACAAGATCAGCTCATTTGAGGCGCTTTTCAAGCTTAATAGACAGTGTTGTCATTCTTGATGAGGTCCAATCGTTGCC
AATTGAAGTGACGACCTTATTTAATTTGACGATGACTTTTTTGAGTCGTGTAATGCAGACAACGATTGTGTTATGTACGG
CGACACAGCCAGCCTATGATTCAGAAAGTATTACTCATACCTTAACTTATGGCGGCAGCAAGGCAGAAGAGGCTGATATT
GTGACAGTAACTGATGAAGAGCAACTGGCCTTCACTCGGACAGAGCTTTGTAAGTTATCAGACAGCGATGAGAAAACCAG
TCTAGTAGAGCTGGCACATACTATCCTAGAGCAGGAGATGTCAACCTTGGTTATTTTGAATACTAAGCCAGCTGTTGAAA
GGCTCTATCAGCATCTGAGGGATCAAACGGAACGCCCTCTCTATCAGCTATCCACTAATATGTGTCTTAAGCATCGACTG
GATGTGATTGCGGAGATTAAGAGTCGCTTACCCAATAACGTTCCCTTGATTTGTGTGAGTACTCAGCTGATCGAAGCAGG
AGTGGATATTGATTTTGAACGTGTTATTCGCTCTTATGCTGGTATTGATTCTATTGTGCAGGCAGCTGGTCGTTGTAATC
GAGAAGGCAGATGTCCTATTGGTCAAGTGCTCTTGGTTAACCTAACTGATGATGAGGAAAACTTATCTTATTTAAAAGAA
ATAAAGCATAAAAAGGACGCGACAGAGACAATCTTGTATCAAAAAACATCACTTATTGATATTGCTGCTTTAAATGAGGC
TTTTTTTAATTGCTATTATGAGAACAATAAGAAGCGTCTTGATTATCCTCTGGGAGACAACGAAAGTGTTTATCAATATT
TGAGTAGCAATGCGCCCAGCAATATTAAAAAAGGAAAGCTGCGACAGGCTTTCAAGACTGCAGGTCAGAAAATGGATTTG
ATTCAGGATCAGAGTATTGGTGTTTTTGTCTATTATGACGATGGAGTTGGGCGAGAAAGACTAGAAGCACTTGAAGAGCA
ATTGCTAAAAAGCAGTTACCCTAGCAGTGAGGAATTAAAGGCCATTAAAGCAGAGCTGAAAGCTCTGCAGCCTTACACTA
TTACTCTACGGGATAATCATGAGCTATTGAAGGCAACTCGCTCTTACCTCAGTGGGCAAATCCTGATCCTTCAGGAGCAT
TATTATAATCAAACATTTGGATTAACAAAAGAAGCAGACAGCTTTATCTTGTAG

Upstream 100 bases:

>100_bases
TAATAAAATGCAATGTATGCGTTTACATTTTGTGAGAAATAGGTTAAAATATTATTGTGAAAAGATTATTTTGTATTATG
TGTCAAGGAGAAGGTCATAT

Downstream 100 bases:

>100_bases
GAGAAGATATAGCTGCCTGCCAAGTCAGCTTGACATAAAAAAATAAACAATTTCAATCCGCATAGCCAAGGCTATGATAT
AGGAAGTATAGCATACTATA

Product: CRISPR-Associated Helicase Cas3 Core

Products: NA

Alternate protein names: Helicase; CRISPR-Associated Helicase Cas3 Family Protein Protein; CRISPR-Associated Helicase Cas3 Domain Protein; CRISPR-Associated HD Domain Protein; CRISPR-Associated Helicase Cas3 Domain-Containing Protein; ATP-Dependent RNA Helicase; CRISPR-Associated Helicase; DEAD/DEAH Box Helicase Domain-Containing Protein; Crispr-Associated Helicase Cas3 Domain Protein; Crispr-Associated Hd Domain Protein; Helicases; CRISPR-Associated Helicase Cas3 Core; CRISPR-Associated Helicase Cas3 Family; Helicase-Like Protein; CRISPR-Associated Helicase Cas3-Like Protein; ATP-Dependent Helicase; Cas3 Family CRISPR-Associated Helicase; Helicases-Like Protein; CRISPR-Associated Helicase Cas3 Protein; CRISPR-Associated HD Domain-Containing Protein; ATP-Dependent RNA Helicase SrmB

Number of amino acids: Translated: 817; Mature: 817

Protein sequence:

>817_residues
MILAHYQGKTDLEPAKEQSLEEHSFQVAELARTAATSIKQGDLLFLLGLFHDLGKAGYRFQEKLLKKPNSHVDHAYAGAR
YLYDEIGKILLGHVQQYPHSKSLVLYFRDIVAYVISAHHGMYDLRMTEPAEEASRFAYNKLLHRMFQERPGYHYQKDVFT
FVEVLEQSLPRYGYDHLADLITRAFYNFQLAWDKLDMADSSEQDYYSGCFVRLYLSLLKNADVLDTINAYETVIEPLTEE
KQEELRISYLEAVESLYASFGQSKLRLNAIRNKLAERVKGRGREDSTGIYRLNLPTGAGKTNLSLRYATHQMVYQQKKHF
LYVTPFLSVLEQNALAMKQVIGEEGVLEHHSNVVREIDNTNQNNDDADEDRDSLRREYLIDSWDSPVVLTSMVQFFQTLF
KTRSAHLRRFSSLIDSVVILDEVQSLPIEVTTLFNLTMTFLSRVMQTTIVLCTATQPAYDSESITHTLTYGGSKAEEADI
VTVTDEEQLAFTRTELCKLSDSDEKTSLVELAHTILEQEMSTLVILNTKPAVERLYQHLRDQTERPLYQLSTNMCLKHRL
DVIAEIKSRLPNNVPLICVSTQLIEAGVDIDFERVIRSYAGIDSIVQAAGRCNREGRCPIGQVLLVNLTDDEENLSYLKE
IKHKKDATETILYQKTSLIDIAALNEAFFNCYYENNKKRLDYPLGDNESVYQYLSSNAPSNIKKGKLRQAFKTAGQKMDL
IQDQSIGVFVYYDDGVGRERLEALEEQLLKSSYPSSEELKAIKAELKALQPYTITLRDNHELLKATRSYLSGQILILQEH
YYNQTFGLTKEADSFIL

Sequences:

>Translated_817_residues
MILAHYQGKTDLEPAKEQSLEEHSFQVAELARTAATSIKQGDLLFLLGLFHDLGKAGYRFQEKLLKKPNSHVDHAYAGAR
YLYDEIGKILLGHVQQYPHSKSLVLYFRDIVAYVISAHHGMYDLRMTEPAEEASRFAYNKLLHRMFQERPGYHYQKDVFT
FVEVLEQSLPRYGYDHLADLITRAFYNFQLAWDKLDMADSSEQDYYSGCFVRLYLSLLKNADVLDTINAYETVIEPLTEE
KQEELRISYLEAVESLYASFGQSKLRLNAIRNKLAERVKGRGREDSTGIYRLNLPTGAGKTNLSLRYATHQMVYQQKKHF
LYVTPFLSVLEQNALAMKQVIGEEGVLEHHSNVVREIDNTNQNNDDADEDRDSLRREYLIDSWDSPVVLTSMVQFFQTLF
KTRSAHLRRFSSLIDSVVILDEVQSLPIEVTTLFNLTMTFLSRVMQTTIVLCTATQPAYDSESITHTLTYGGSKAEEADI
VTVTDEEQLAFTRTELCKLSDSDEKTSLVELAHTILEQEMSTLVILNTKPAVERLYQHLRDQTERPLYQLSTNMCLKHRL
DVIAEIKSRLPNNVPLICVSTQLIEAGVDIDFERVIRSYAGIDSIVQAAGRCNREGRCPIGQVLLVNLTDDEENLSYLKE
IKHKKDATETILYQKTSLIDIAALNEAFFNCYYENNKKRLDYPLGDNESVYQYLSSNAPSNIKKGKLRQAFKTAGQKMDL
IQDQSIGVFVYYDDGVGRERLEALEEQLLKSSYPSSEELKAIKAELKALQPYTITLRDNHELLKATRSYLSGQILILQEH
YYNQTFGLTKEADSFIL
>Mature_817_residues
MILAHYQGKTDLEPAKEQSLEEHSFQVAELARTAATSIKQGDLLFLLGLFHDLGKAGYRFQEKLLKKPNSHVDHAYAGAR
YLYDEIGKILLGHVQQYPHSKSLVLYFRDIVAYVISAHHGMYDLRMTEPAEEASRFAYNKLLHRMFQERPGYHYQKDVFT
FVEVLEQSLPRYGYDHLADLITRAFYNFQLAWDKLDMADSSEQDYYSGCFVRLYLSLLKNADVLDTINAYETVIEPLTEE
KQEELRISYLEAVESLYASFGQSKLRLNAIRNKLAERVKGRGREDSTGIYRLNLPTGAGKTNLSLRYATHQMVYQQKKHF
LYVTPFLSVLEQNALAMKQVIGEEGVLEHHSNVVREIDNTNQNNDDADEDRDSLRREYLIDSWDSPVVLTSMVQFFQTLF
KTRSAHLRRFSSLIDSVVILDEVQSLPIEVTTLFNLTMTFLSRVMQTTIVLCTATQPAYDSESITHTLTYGGSKAEEADI
VTVTDEEQLAFTRTELCKLSDSDEKTSLVELAHTILEQEMSTLVILNTKPAVERLYQHLRDQTERPLYQLSTNMCLKHRL
DVIAEIKSRLPNNVPLICVSTQLIEAGVDIDFERVIRSYAGIDSIVQAAGRCNREGRCPIGQVLLVNLTDDEENLSYLKE
IKHKKDATETILYQKTSLIDIAALNEAFFNCYYENNKKRLDYPLGDNESVYQYLSSNAPSNIKKGKLRQAFKTAGQKMDL
IQDQSIGVFVYYDDGVGRERLEALEEQLLKSSYPSSEELKAIKAELKALQPYTITLRDNHELLKATRSYLSGQILILQEH
YYNQTFGLTKEADSFIL

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 93598; Mature: 93598

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILAHYQGKTDLEPAKEQSLEEHSFQVAELARTAATSIKQGDLLFLLGLFHDLGKAGYRF
CEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
QEKLLKKPNSHVDHAYAGARYLYDEIGKILLGHVQQYPHSKSLVLYFRDIVAYVISAHHG
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
MYDLRMTEPAEEASRFAYNKLLHRMFQERPGYHYQKDVFTFVEVLEQSLPRYGYDHLADL
EEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
ITRAFYNFQLAWDKLDMADSSEQDYYSGCFVRLYLSLLKNADVLDTINAYETVIEPLTEE
HHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
KQEELRISYLEAVESLYASFGQSKLRLNAIRNKLAERVKGRGREDSTGIYRLNLPTGAGK
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC
TNLSLRYATHQMVYQQKKHFLYVTPFLSVLEQNALAMKQVIGEEGVLEHHSNVVREIDNT
CCCEEEHHHHHHHHHHHHCEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
NQNNDDADEDRDSLRREYLIDSWDSPVVLTSMVQFFQTLFKTRSAHLRRFSSLIDSVVIL
CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DEVQSLPIEVTTLFNLTMTFLSRVMQTTIVLCTATQPAYDSESITHTLTYGGSKAEEADI
HHHHCCCEEHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCEEEEEECCCCCCCCCE
VTVTDEEQLAFTRTELCKLSDSDEKTSLVELAHTILEQEMSTLVILNTKPAVERLYQHLR
EEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHH
DQTERPLYQLSTNMCLKHRLDVIAEIKSRLPNNVPLICVSTQLIEAGVDIDFERVIRSYA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCCCCHHHHHHHHH
GIDSIVQAAGRCNREGRCPIGQVLLVNLTDDEENLSYLKEIKHKKDATETILYQKTSLID
CHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHH
IAALNEAFFNCYYENNKKRLDYPLGDNESVYQYLSSNAPSNIKKGKLRQAFKTAGQKMDL
HHHHHHHHHHHHEECCCCEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHH
IQDQSIGVFVYYDDGVGRERLEALEEQLLKSSYPSSEELKAIKAELKALQPYTITLRDNH
CCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCH
ELLKATRSYLSGQILILQEHYYNQTFGLTKEADSFIL
HHHHHHHHHHCCEEEEEEEHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MILAHYQGKTDLEPAKEQSLEEHSFQVAELARTAATSIKQGDLLFLLGLFHDLGKAGYRF
CEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
QEKLLKKPNSHVDHAYAGARYLYDEIGKILLGHVQQYPHSKSLVLYFRDIVAYVISAHHG
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
MYDLRMTEPAEEASRFAYNKLLHRMFQERPGYHYQKDVFTFVEVLEQSLPRYGYDHLADL
EEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
ITRAFYNFQLAWDKLDMADSSEQDYYSGCFVRLYLSLLKNADVLDTINAYETVIEPLTEE
HHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
KQEELRISYLEAVESLYASFGQSKLRLNAIRNKLAERVKGRGREDSTGIYRLNLPTGAGK
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC
TNLSLRYATHQMVYQQKKHFLYVTPFLSVLEQNALAMKQVIGEEGVLEHHSNVVREIDNT
CCCEEEHHHHHHHHHHHHCEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
NQNNDDADEDRDSLRREYLIDSWDSPVVLTSMVQFFQTLFKTRSAHLRRFSSLIDSVVIL
CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DEVQSLPIEVTTLFNLTMTFLSRVMQTTIVLCTATQPAYDSESITHTLTYGGSKAEEADI
HHHHCCCEEHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCEEEEEECCCCCCCCCE
VTVTDEEQLAFTRTELCKLSDSDEKTSLVELAHTILEQEMSTLVILNTKPAVERLYQHLR
EEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHH
DQTERPLYQLSTNMCLKHRLDVIAEIKSRLPNNVPLICVSTQLIEAGVDIDFERVIRSYA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCCCCHHHHHHHHH
GIDSIVQAAGRCNREGRCPIGQVLLVNLTDDEENLSYLKEIKHKKDATETILYQKTSLID
CHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHH
IAALNEAFFNCYYENNKKRLDYPLGDNESVYQYLSSNAPSNIKKGKLRQAFKTAGQKMDL
HHHHHHHHHHHHEECCCCEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHH
IQDQSIGVFVYYDDGVGRERLEALEEQLLKSSYPSSEELKAIKAELKALQPYTITLRDNH
CCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCH
ELLKATRSYLSGQILILQEHYYNQTFGLTKEADSFIL
HHHHHHHHHHCCEEEEEEEHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA