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The map label for this gene is rbsD [H]

Identifier: 195977611

GI number: 195977611

Start: 491045

End: 491452

Strand: Direct

Name: rbsD [H]

Synonym: Sez_0470

Alternate gene names: 195977611

Gene position: 491045-491452 (Clockwise)

Preceding gene: 195977610

Following gene: 195977612

Centisome position: 24.26

GC content: 41.91

Gene sequence:

>408_bases
ATGAAGCATATGAAAAAGCATGGGATTTTAAATAGCGATGTAGCTAAGTTGGCTGCCGATTTAGGACATACTGATCGTGT
CTGCATTGGAGATTTGGGGCTGCCGGTTCCTGTAGGAGTCCCGAAGATTGATCTGGCACTTAAGCGTGGTCTGCCAAGTT
TTCAGGACGTGTTAGGCATGTATCTTGAGCATGTGGTGATTGAGAAGGTGATTCTTGCTGAGGAAATAAAGACAGCCAAT
CCAGATCAGCTAGCAGCTATTTTGACACAATTAGATGATACAGTAGCTGTTGAATATGTCAGTCACGAAGAATTGAAAGC
GCTTAATAAATCCGTTAAGGCAGTTATCCGAACAGGAGAGGATACACCTTATTCAAACATCATTTTACAATCAGGAGTCA
CTATTTAG

Upstream 100 bases:

>100_bases
ACAGCGGCAGCCTTACGCTTTGCGACCTTGGCTTCTCACCTATCTGTCCAACAATTTGGTGCCCAAGGGGGCATGCCAAG
GCTAGAAGAAATGAAGGAGC

Downstream 100 bases:

>100_bases
AAGGGAGGTAGAACCATGAAAATTGAAATGACTGCCATTTCTAAATCCTTTGGGACCAACAAGGTGCTAGAAAAAATAGA
TCTGGTGCTGCATTCAGGCC

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MKHMKKHGILNSDVAKLAADLGHTDRVCIGDLGLPVPVGVPKIDLALKRGLPSFQDVLGMYLEHVVIEKVILAEEIKTAN
PDQLAAILTQLDDTVAVEYVSHEELKALNKSVKAVIRTGEDTPYSNIILQSGVTI

Sequences:

>Translated_135_residues
MKHMKKHGILNSDVAKLAADLGHTDRVCIGDLGLPVPVGVPKIDLALKRGLPSFQDVLGMYLEHVVIEKVILAEEIKTAN
PDQLAAILTQLDDTVAVEYVSHEELKALNKSVKAVIRTGEDTPYSNIILQSGVTI
>Mature_135_residues
MKHMKKHGILNSDVAKLAADLGHTDRVCIGDLGLPVPVGVPKIDLALKRGLPSFQDVLGMYLEHVVIEKVILAEEIKTAN
PDQLAAILTQLDDTVAVEYVSHEELKALNKSVKAVIRTGEDTPYSNIILQSGVTI

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose [H]

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=43.1654676258993, Blast_Score=123, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023064
- InterPro:   IPR007721 [H]

Pfam domain/function: PF05025 RbsD_FucU [H]

EC number: NA

Molecular weight: Translated: 14632; Mature: 14632

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHMKKHGILNSDVAKLAADLGHTDRVCIGDLGLPVPVGVPKIDLALKRGLPSFQDVLGM
CCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
YLEHVVIEKVILAEEIKTANPDQLAAILTQLDDTVAVEYVSHEELKALNKSVKAVIRTGE
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DTPYSNIILQSGVTI
CCCHHHHHHCCCCCC
>Mature Secondary Structure
MKHMKKHGILNSDVAKLAADLGHTDRVCIGDLGLPVPVGVPKIDLALKRGLPSFQDVLGM
CCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
YLEHVVIEKVILAEEIKTANPDQLAAILTQLDDTVAVEYVSHEELKALNKSVKAVIRTGE
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DTPYSNIILQSGVTI
CCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA