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The map label for this gene is rbsR [H]

Identifier: 195977609

GI number: 195977609

Start: 489192

End: 490175

Strand: Direct

Name: rbsR [H]

Synonym: Sez_0468

Alternate gene names: 195977609

Gene position: 489192-490175 (Clockwise)

Preceding gene: 195977608

Following gene: 195977610

Centisome position: 24.17

GC content: 45.22

Gene sequence:

>984_bases
ATGGCGACAATTAAACAGGTAGCCAAGGAAGCTGGTTTATCAAAGTCAACAGTTTCACGCTACATTTCACAAAAAGGCTA
TGTCAGTGAGGAGGCAAGAGATAGGATTAAGGCAGCTATTGAAAAGCTGCACTACAGTCCAAATCTGTCTGCTCAATCCT
TAAAAACCAAGAAAAACCAGCTGGTGGGCTTGCTTCTGCCGGATATTTCTAACCCTTTTTTCCCTCGCTTGGCTAGAGGG
GCTGAGACCTTTTTGAAGGAAAAGGGCTACCGCGTCATGCTGGGAAATCTCTCAGACAATCCAGTCTTGGAGGAGGAGTA
TCTTAATGTCATGCGACAAAGTAATGCGGCTGGCATTATTACGACACATGACTTTACCAAGACTCACCCGGAGATTGACA
TTCCAATTGTGGTGGTTGACCGGGTCAATCAAGAAACCCAATTTGGTGTCTTTTCAGACAACGAAGAGGGCGGGCGACTG
GCTGCCCAGAAGGTTTGTGAGTCGGGTGCCGATCATATCCTTCTTATCCGAGGGCCGCTAGATGATGCTGAAAACCTGCA
CGAGCGTTTTGAAGCTAGCCTAGCCTACCTTCAGGAGGCTGGTGTTCGGACGTCTATTTGCGATAGTAGTAGCTTTGACT
TTGAAGCCATTCAAGACGAAGCCAAGCAGGCTCTGGCTGATTTTCCAGATTTGGATAGTGTCATTGCACCATCAGATATC
CATGCCATTGCTTACATTCATGAGCTTCATTCCTGTGGTAAAAGGATTCCAGAAGATGTTCAGGTGATGGGCTACGATGA
TATTTTGATGAGTCAGTTTATTTATCCATCACTTTCAACCATTCATCAATCCTCTTACTTGCTGGGCTATAAGGCCGCTG
AATTGGTTTATCAGATTACCAACCAGCTTCCGATTGATGAAAAGCGTATAAAATTACCCGTTCACTATGTGGAACGCGAA
ACAATAAGGAGAAAGCATGAGTAA

Upstream 100 bases:

>100_bases
AGTCACAAAATAAAATGGGTAAAAGGTATTGACAGTGATTTAGAAAACGGTTACAATAACAACATGAGAACGGTTCCACA
AAAAGAAGGTGATAAGACTT

Downstream 100 bases:

>100_bases
TATTGTGATTATTGGTAGCATTTCTATGGACCTTGTCATGGAAACTAAGCGGATTGCTAAGGAGGGCGAAACGGTCTTTG
GAGAAGCCTTTTCTATGGTT

Product: ribose operon repressor RbsR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MATIKQVAKEAGLSKSTVSRYISQKGYVSEEARDRIKAAIEKLHYSPNLSAQSLKTKKNQLVGLLLPDISNPFFPRLARG
AETFLKEKGYRVMLGNLSDNPVLEEEYLNVMRQSNAAGIITTHDFTKTHPEIDIPIVVVDRVNQETQFGVFSDNEEGGRL
AAQKVCESGADHILLIRGPLDDAENLHERFEASLAYLQEAGVRTSICDSSSFDFEAIQDEAKQALADFPDLDSVIAPSDI
HAIAYIHELHSCGKRIPEDVQVMGYDDILMSQFIYPSLSTIHQSSYLLGYKAAELVYQITNQLPIDEKRIKLPVHYVERE
TIRRKHE

Sequences:

>Translated_327_residues
MATIKQVAKEAGLSKSTVSRYISQKGYVSEEARDRIKAAIEKLHYSPNLSAQSLKTKKNQLVGLLLPDISNPFFPRLARG
AETFLKEKGYRVMLGNLSDNPVLEEEYLNVMRQSNAAGIITTHDFTKTHPEIDIPIVVVDRVNQETQFGVFSDNEEGGRL
AAQKVCESGADHILLIRGPLDDAENLHERFEASLAYLQEAGVRTSICDSSSFDFEAIQDEAKQALADFPDLDSVIAPSDI
HAIAYIHELHSCGKRIPEDVQVMGYDDILMSQFIYPSLSTIHQSSYLLGYKAAELVYQITNQLPIDEKRIKLPVHYVERE
TIRRKHE
>Mature_326_residues
ATIKQVAKEAGLSKSTVSRYISQKGYVSEEARDRIKAAIEKLHYSPNLSAQSLKTKKNQLVGLLLPDISNPFFPRLARGA
ETFLKEKGYRVMLGNLSDNPVLEEEYLNVMRQSNAAGIITTHDFTKTHPEIDIPIVVVDRVNQETQFGVFSDNEEGGRLA
AQKVCESGADHILLIRGPLDDAENLHERFEASLAYLQEAGVRTSICDSSSFDFEAIQDEAKQALADFPDLDSVIAPSDIH
AIAYIHELHSCGKRIPEDVQVMGYDDILMSQFIYPSLSTIHQSSYLLGYKAAELVYQITNQLPIDEKRIKLPVHYVERET
IRRKHE

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=332, Percent_Identity=31.6265060240964, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1787948, Length=316, Percent_Identity=31.0126582278481, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1790369, Length=304, Percent_Identity=27.3026315789474, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI48994940, Length=302, Percent_Identity=27.1523178807947, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1789068, Length=292, Percent_Identity=27.0547945205479, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1789202, Length=296, Percent_Identity=26.3513513513513, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1788474, Length=310, Percent_Identity=26.1290322580645, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1790715, Length=312, Percent_Identity=24.3589743589744, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787580, Length=320, Percent_Identity=25.625, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786540, Length=329, Percent_Identity=24.3161094224924, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1786268, Length=215, Percent_Identity=25.1162790697674, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787906, Length=185, Percent_Identity=29.1891891891892, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790689, Length=311, Percent_Identity=23.1511254019293, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36734; Mature: 36603

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIKQVAKEAGLSKSTVSRYISQKGYVSEEARDRIKAAIEKLHYSPNLSAQSLKTKKNQ
CCHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
LVGLLLPDISNPFFPRLARGAETFLKEKGYRVMLGNLSDNPVLEEEYLNVMRQSNAAGII
EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEE
TTHDFTKTHPEIDIPIVVVDRVNQETQFGVFSDNEEGGRLAAQKVCESGADHILLIRGPL
EECCCCCCCCCCCCCEEEEECCCCCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEEECCC
DDAENLHERFEASLAYLQEAGVRTSICDSSSFDFEAIQDEAKQALADFPDLDSVIAPSDI
CCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHH
HAIAYIHELHSCGKRIPEDVQVMGYDDILMSQFIYPSLSTIHQSSYLLGYKAAELVYQIT
HHHHHHHHHHHHHHCCCCHHEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
NQLPIDEKRIKLPVHYVERETIRRKHE
HCCCCCCHHEECCHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATIKQVAKEAGLSKSTVSRYISQKGYVSEEARDRIKAAIEKLHYSPNLSAQSLKTKKNQ
CHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
LVGLLLPDISNPFFPRLARGAETFLKEKGYRVMLGNLSDNPVLEEEYLNVMRQSNAAGII
EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEE
TTHDFTKTHPEIDIPIVVVDRVNQETQFGVFSDNEEGGRLAAQKVCESGADHILLIRGPL
EECCCCCCCCCCCCCEEEEECCCCCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEEECCC
DDAENLHERFEASLAYLQEAGVRTSICDSSSFDFEAIQDEAKQALADFPDLDSVIAPSDI
CCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHH
HAIAYIHELHSCGKRIPEDVQVMGYDDILMSQFIYPSLSTIHQSSYLLGYKAAELVYQIT
HHHHHHHHHHHHHHCCCCHHEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
NQLPIDEKRIKLPVHYVERETIRRKHE
HCCCCCCHHEECCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]