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The map label for this gene is rbfA

Identifier: 195977586

GI number: 195977586

Start: 468724

End: 469074

Strand: Direct

Name: rbfA

Synonym: Sez_0445

Alternate gene names: 195977586

Gene position: 468724-469074 (Clockwise)

Preceding gene: 195977584

Following gene: 195977588

Centisome position: 23.16

GC content: 38.75

Gene sequence:

>351_bases
ATGACAAATCATCGTATTGATCGTGTTGGTATGGAAATCAAGCGTGAGGTCAACGAGATTTTACACAAAAAGGTTCGTGA
TCCACGTGTGCAGGGTGTTACGATCACAGAAGTGCAAATGCTGGGAGATTTGTCAGTTGCTAAGGTTTACTATACCATTA
TGAGTGACCTAGCTTCAGACAATCAAAAGGCTGAAATAGGTCTAAAAAAGGCAACAGGAACCATTAAGCGTGAGCTTGGT
AAGCAATTAACCATGTATAAAATCCCGGATTTGGTTTTTGAAAAGGACAATTCTATCGCCTATGGCAATAAAATTGATCA
ATTGCTTCGTGAGTTAGAAAAGAAACAGTAA

Upstream 100 bases:

>100_bases
CATCAGCCTAATAGAGAAAAAGGCTTGAAAGTCATCAAGCTTTTCTCTTGTTATTGGGCTATTAAGAGCCTGTACTATTT
GACAATAGAAAGGAAGTGCC

Downstream 100 bases:

>100_bases
TCATGCTGTGATCAGAAAATGCCTACCAGGCTTTGGCAAAAAGCTCAAGTCTGGTAGGCATTTTTGTATTATTATTTTTG
GGGTTCGTACTCTTTTTTTA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MTNHRIDRVGMEIKREVNEILHKKVRDPRVQGVTITEVQMLGDLSVAKVYYTIMSDLASDNQKAEIGLKKATGTIKRELG
KQLTMYKIPDLVFEKDNSIAYGNKIDQLLRELEKKQ

Sequences:

>Translated_116_residues
MTNHRIDRVGMEIKREVNEILHKKVRDPRVQGVTITEVQMLGDLSVAKVYYTIMSDLASDNQKAEIGLKKATGTIKRELG
KQLTMYKIPDLVFEKDNSIAYGNKIDQLLRELEKKQ
>Mature_115_residues
TNHRIDRVGMEIKREVNEILHKKVRDPRVQGVTITEVQMLGDLSVAKVYYTIMSDLASDNQKAEIGLKKATGTIKRELGK
QLTMYKIPDLVFEKDNSIAYGNKIDQLLRELEKKQ

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=107, Percent_Identity=37.3831775700935, Blast_Score=71, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_STRE4 (C0M8P8)

Other databases:

- EMBL:   FM204883
- RefSeq:   YP_002745889.1
- ProteinModelPortal:   C0M8P8
- EnsemblBacteria:   EBSTRT00000067464
- GeneID:   7696730
- GenomeReviews:   FM204883_GR
- KEGG:   seu:SEQ_0519
- GeneTree:   EBGT00050000027412
- OMA:   QMRRAPE
- ProtClustDB:   PRK00521
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13332; Mature: 13201

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNHRIDRVGMEIKREVNEILHKKVRDPRVQGVTITEVQMLGDLSVAKVYYTIMSDLASD
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHCCHHHHHHHHHHHHHHHCC
NQKAEIGLKKATGTIKRELGKQLTMYKIPDLVFEKDNSIAYGNKIDQLLRELEKKQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCEECCHHHHHHHHHHHHCC
>Mature Secondary Structure 
TNHRIDRVGMEIKREVNEILHKKVRDPRVQGVTITEVQMLGDLSVAKVYYTIMSDLASD
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHCCHHHHHHHHHHHHHHHCC
NQKAEIGLKKATGTIKRELGKQLTMYKIPDLVFEKDNSIAYGNKIDQLLRELEKKQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCEECCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA