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The map label for this gene is araQ [H]

Identifier: 195977395

GI number: 195977395

Start: 270438

End: 271268

Strand: Direct

Name: araQ [H]

Synonym: Sez_0248

Alternate gene names: 195977395

Gene position: 270438-271268 (Clockwise)

Preceding gene: 195977394

Following gene: 195977396

Centisome position: 13.36

GC content: 43.2

Gene sequence:

>831_bases
ATGAAGAAAAAGAAATTAACAGCATCAGATATCCTAACAACAGCCATTTTGTGTTTATTAACAATATTATTTATTTTCCC
CTTTTATTGGATCATGACAGGAGCCTTTAAATCCCAGCCGGATACTATTGTTGTCCCACCACAATGGTGGCCAAAGGCAC
CTACTGTTGAAAATTTTAAGGCCTTGATTATTCAAAATCCGGCTCTGAAATGGCTCTGGAACAGTATCTATATTTCTGTT
GCCACCATGCTTTTGGTTTGTGGCACGTCCTCTCTGGCAGGCTATGCCTTAGCGAAAAAACGGTTTTATGGGCAGCGTTT
GTTGTTTTCAGTCTTTATTGCTGCTATGGCTCTGCCTAAGCAGGTCGTCTTGGTGCCATTGGTTCGTATTGTGAATTTTA
TGGGCATCCACGATACGCTAGCAGCAGTTATTTTGCCTTTGGTGGGCTGGCCTTTTGGGGTATTCCTGATGAAGCAATTT
TCAGAAAATATCCCAACGGAGCTGTTGGAGTCTGCTAAAATTGACGGCTGCGGTGAAATTAGAACCTTCTTTAACGTTGC
TTTTCCAATCATTAAGCCAGGTTTTGCTGCCTTAGCGATCTTTACCTTTATTAATACTTGGAATGACTACTTTATGCAGC
TCGTGATGCTCACATCACGCGATAACCTGACCATCTCTCTAGGGGTTGCCACCATGCAGGCTGAGATGGCAACAAACTAT
GGTTTGATCATGGCTGGTGCAGCTCTTGCAGCAGTACCGATTGTTACAGTCTTCCTTGTGTTCCAAAAATCCTTTACCCA
AGGTATCACCATGGGAGCTGTGAAGGGCTAA

Upstream 100 bases:

>100_bases
TAACACGATGGGGGTTTTCTTGGCTATCTTGATTGCACTGATCAGCTTTGCCCAGTTCAAATTCTTGGGTAATGATGTGG
AATATTAAAAGGAGCTTGAC

Downstream 100 bases:

>100_bases
TATAGCCTTAGAAAGGTCAGGAGATTATGCTCTATGATGTCTTGGAAAACATTCGTCGCTATAAGGGGATTCATCATCAT
TTGGATTTAGCCATTGACTT

Product: ABC transporter membrane-spanning permease - sugar transport

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MKKKKLTASDILTTAILCLLTILFIFPFYWIMTGAFKSQPDTIVVPPQWWPKAPTVENFKALIIQNPALKWLWNSIYISV
ATMLLVCGTSSLAGYALAKKRFYGQRLLFSVFIAAMALPKQVVLVPLVRIVNFMGIHDTLAAVILPLVGWPFGVFLMKQF
SENIPTELLESAKIDGCGEIRTFFNVAFPIIKPGFAALAIFTFINTWNDYFMQLVMLTSRDNLTISLGVATMQAEMATNY
GLIMAGAALAAVPIVTVFLVFQKSFTQGITMGAVKG

Sequences:

>Translated_276_residues
MKKKKLTASDILTTAILCLLTILFIFPFYWIMTGAFKSQPDTIVVPPQWWPKAPTVENFKALIIQNPALKWLWNSIYISV
ATMLLVCGTSSLAGYALAKKRFYGQRLLFSVFIAAMALPKQVVLVPLVRIVNFMGIHDTLAAVILPLVGWPFGVFLMKQF
SENIPTELLESAKIDGCGEIRTFFNVAFPIIKPGFAALAIFTFINTWNDYFMQLVMLTSRDNLTISLGVATMQAEMATNY
GLIMAGAALAAVPIVTVFLVFQKSFTQGITMGAVKG
>Mature_276_residues
MKKKKLTASDILTTAILCLLTILFIFPFYWIMTGAFKSQPDTIVVPPQWWPKAPTVENFKALIIQNPALKWLWNSIYISV
ATMLLVCGTSSLAGYALAKKRFYGQRLLFSVFIAAMALPKQVVLVPLVRIVNFMGIHDTLAAVILPLVGWPFGVFLMKQF
SENIPTELLESAKIDGCGEIRTFFNVAFPIIKPGFAALAIFTFINTWNDYFMQLVMLTSRDNLTISLGVATMQAEMATNY
GLIMAGAALAAVPIVTVFLVFQKSFTQGITMGAVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=280, Percent_Identity=27.8571428571429, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1789860, Length=267, Percent_Identity=28.8389513108614, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1790464, Length=217, Percent_Identity=28.110599078341, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30509; Mature: 30509

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKKLTASDILTTAILCLLTILFIFPFYWIMTGAFKSQPDTIVVPPQWWPKAPTVENFK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHH
ALIIQNPALKWLWNSIYISVATMLLVCGTSSLAGYALAKKRFYGQRLLFSVFIAAMALPK
EEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
QVVLVPLVRIVNFMGIHDTLAAVILPLVGWPFGVFLMKQFSENIPTELLESAKIDGCGEI
HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHCCCCCCHHH
RTFFNVAFPIIKPGFAALAIFTFINTWNDYFMQLVMLTSRDNLTISLGVATMQAEMATNY
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCC
GLIMAGAALAAVPIVTVFLVFQKSFTQGITMGAVKG
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKKKKLTASDILTTAILCLLTILFIFPFYWIMTGAFKSQPDTIVVPPQWWPKAPTVENFK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHH
ALIIQNPALKWLWNSIYISVATMLLVCGTSSLAGYALAKKRFYGQRLLFSVFIAAMALPK
EEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
QVVLVPLVRIVNFMGIHDTLAAVILPLVGWPFGVFLMKQFSENIPTELLESAKIDGCGEI
HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHCCCCCCHHH
RTFFNVAFPIIKPGFAALAIFTFINTWNDYFMQLVMLTSRDNLTISLGVATMQAEMATNY
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCC
GLIMAGAALAAVPIVTVFLVFQKSFTQGITMGAVKG
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]