Click here to switch to the map view.

The map label for this gene is ydcP [C]

Identifier: 195953048

GI number: 195953048

Start: 602086

End: 603276

Strand: Direct

Name: ydcP [C]

Synonym: HY04AAS1_0673

Alternate gene names: 195953048

Gene position: 602086-603276 (Clockwise)

Preceding gene: 195953047

Following gene: 195953049

Centisome position: 38.61

GC content: 36.02

Gene sequence:

>1191_bases
ATGAAAAAGCCAGAGATACTATCTCCAGTAGGTCATTTTGAAGGATTGATGTCCGCAATAAAAGCCGGTGCTGATGCTGT
ATACATGGGACTTGAAAAACTAAATCAAAGAGCTGGAAAAGGTGGTTTTTCAAAAGAAGATATAAAAGAAATTAGACTTA
TAACCAAAGACCATGGTATAAGGCAATATATAACGCTAAATTCTATAGTGTTTGATGAAGATTTACCTTATTTGGAAGAT
GTACTTGATTTTTTAAAAGAAATAGAAGTTGATGCGGTTATAGCTTGGGATTTCTCGGTAGTACTTGGAAGTATAAAAAG
AGGTTTAGAAACACATATCTCCACAATGGCATCGGTATCAAACCACATATCTGGTAAATTCTATAAAGAACTTGGCGTAA
AACGAATAGTCCCGGCAAAGGAGTTAGATTTAAACTCCATTAAAAGCTTAAAACAAAATACCGGATTAGAAGTAGAGGTT
TTCGTACATGGATCTATGTGTATGGCTGTATCCGGTAGATGTTTTTTGAGCCATGAGGTTTTTCAAAAATCCGGAAACAG
AGGAGAGTGCTATCAAGTCTGTAGACACGAGTTTGACATAAAGGTAATATCGAAAAACTCCGGCACAGAGTATTACCTTG
GTAGCGACTATGTTATGTCAGCCAAAGATCTTCTTACTATAAACTTTGCGGATAAGCTTATGTGGGCAGACGCTTGGAAG
ATAGAAGGAAGAAACAAAAACCCAGATTATGTTTATATGACCACAAAAGCTTACAGAGAAGCCAGAGAACGTATATTAAA
CAACGAGTGGACCCAAAAAGGCTATCAAGACCTTATAGATATGTTAGAAAGAGTATACCATAGGGAATGGGACGGTGGTT
TTTACTTTGGTGAGGCTTCCTTTGGTATAAACTCATCTATAGCAAAAGAAGAAAAGATATACGTAGGGGATGTTGTAAAA
TTTTATCCCAAGGCTTCTGTGGCAGAGGTAAAAGTAGTAGCACATCCTTTAAAAGTAGGCGATACCATACATATAATAGG
AGAAACCACAGGCCTTGTAAGACAGAAAGTAGAATCAATGGAGATAGAAAATCAACGCATAGATCAAGCAGAAAAAGGCA
CAGCTATAGGTTTAAAAGTGAACGAAAAAGTAAGAGAAAAAGATAAAGTTTATATTGTAAAAGAAAAATAG

Upstream 100 bases:

>100_bases
AGTAGATATAAAAGACGGAGAGTTTGTGTTTGAAACTACCTAACAAATATTTCTGATAACGGCGGGAGAATAACCCGCCA
TTTTTTGCTATAATACTCCA

Downstream 100 bases:

>100_bases
TATAATATTTTTTATGAAAGAGTACGCTTTAGAAATAGCAACAAAAGCAAAAGCTGTATTACCCAAACTTTCAAGTTTAA
ACCCGGCTGTGAAAAATTCT

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MKKPEILSPVGHFEGLMSAIKAGADAVYMGLEKLNQRAGKGGFSKEDIKEIRLITKDHGIRQYITLNSIVFDEDLPYLED
VLDFLKEIEVDAVIAWDFSVVLGSIKRGLETHISTMASVSNHISGKFYKELGVKRIVPAKELDLNSIKSLKQNTGLEVEV
FVHGSMCMAVSGRCFLSHEVFQKSGNRGECYQVCRHEFDIKVISKNSGTEYYLGSDYVMSAKDLLTINFADKLMWADAWK
IEGRNKNPDYVYMTTKAYREARERILNNEWTQKGYQDLIDMLERVYHREWDGGFYFGEASFGINSSIAKEEKIYVGDVVK
FYPKASVAEVKVVAHPLKVGDTIHIIGETTGLVRQKVESMEIENQRIDQAEKGTAIGLKVNEKVREKDKVYIVKEK

Sequences:

>Translated_396_residues
MKKPEILSPVGHFEGLMSAIKAGADAVYMGLEKLNQRAGKGGFSKEDIKEIRLITKDHGIRQYITLNSIVFDEDLPYLED
VLDFLKEIEVDAVIAWDFSVVLGSIKRGLETHISTMASVSNHISGKFYKELGVKRIVPAKELDLNSIKSLKQNTGLEVEV
FVHGSMCMAVSGRCFLSHEVFQKSGNRGECYQVCRHEFDIKVISKNSGTEYYLGSDYVMSAKDLLTINFADKLMWADAWK
IEGRNKNPDYVYMTTKAYREARERILNNEWTQKGYQDLIDMLERVYHREWDGGFYFGEASFGINSSIAKEEKIYVGDVVK
FYPKASVAEVKVVAHPLKVGDTIHIIGETTGLVRQKVESMEIENQRIDQAEKGTAIGLKVNEKVREKDKVYIVKEK
>Mature_396_residues
MKKPEILSPVGHFEGLMSAIKAGADAVYMGLEKLNQRAGKGGFSKEDIKEIRLITKDHGIRQYITLNSIVFDEDLPYLED
VLDFLKEIEVDAVIAWDFSVVLGSIKRGLETHISTMASVSNHISGKFYKELGVKRIVPAKELDLNSIKSLKQNTGLEVEV
FVHGSMCMAVSGRCFLSHEVFQKSGNRGECYQVCRHEFDIKVISKNSGTEYYLGSDYVMSAKDLLTINFADKLMWADAWK
IEGRNKNPDYVYMTTKAYREARERILNNEWTQKGYQDLIDMLERVYHREWDGGFYFGEASFGINSSIAKEEKIYVGDVVK
FYPKASVAEVKVVAHPLKVGDTIHIIGETTGLVRQKVESMEIENQRIDQAEKGTAIGLKVNEKVREKDKVYIVKEK

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=384, Percent_Identity=29.4270833333333, Blast_Score=135, Evalue=6e-33,
Organism=Escherichia coli, GI1788397, Length=344, Percent_Identity=28.1976744186047, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI1789548, Length=329, Percent_Identity=26.1398176291793, Blast_Score=108, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539
- InterPro:   IPR009000 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 44922; Mature: 44922

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKPEILSPVGHFEGLMSAIKAGADAVYMGLEKLNQRAGKGGFSKEDIKEIRLITKDHGI
CCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
RQYITLNSIVFDEDLPYLEDVLDFLKEIEVDAVIAWDFSVVLGSIKRGLETHISTMASVS
EEEEEECCEEECCCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
NHISGKFYKELGVKRIVPAKELDLNSIKSLKQNTGLEVEVFVHGSMCMAVSGRCFLSHEV
HHHCCHHHHHCCCHHCCCCHHCCHHHHHHHHHCCCCEEEEEEECCEEEEECCCEEEEHHH
FQKSGNRGECYQVCRHEFDIKVISKNSGTEYYLGSDYVMSAKDLLTINFADKLMWADAWK
HHCCCCCCHHHHHHHHCCCEEEEECCCCCEEEECCCEEECCCCEEEEEHHHHHHCCCEEE
IEGRNKNPDYVYMTTKAYREARERILNNEWTQKGYQDLIDMLERVYHREWDGGFYFGEAS
ECCCCCCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
FGINSSIAKEEKIYVGDVVKFYPKASVAEVKVVAHPLKVGDTIHIIGETTGLVRQKVESM
CCCCCCCCCCCCEEECHHHHHCCCCCHHEEEEEEEEECCCCEEEEEECCHHHHHHHHHHH
EIENQRIDQAEKGTAIGLKVNEKVREKDKVYIVKEK
HHHHHHCCHHHCCCEEEEEECHHHCCCCCEEEEECC
>Mature Secondary Structure
MKKPEILSPVGHFEGLMSAIKAGADAVYMGLEKLNQRAGKGGFSKEDIKEIRLITKDHGI
CCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
RQYITLNSIVFDEDLPYLEDVLDFLKEIEVDAVIAWDFSVVLGSIKRGLETHISTMASVS
EEEEEECCEEECCCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
NHISGKFYKELGVKRIVPAKELDLNSIKSLKQNTGLEVEVFVHGSMCMAVSGRCFLSHEV
HHHCCHHHHHCCCHHCCCCHHCCHHHHHHHHHCCCCEEEEEEECCEEEEECCCEEEEHHH
FQKSGNRGECYQVCRHEFDIKVISKNSGTEYYLGSDYVMSAKDLLTINFADKLMWADAWK
HHCCCCCCHHHHHHHHCCCEEEEECCCCCEEEECCCEEECCCCEEEEEHHHHHHCCCEEE
IEGRNKNPDYVYMTTKAYREARERILNNEWTQKGYQDLIDMLERVYHREWDGGFYFGEAS
ECCCCCCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
FGINSSIAKEEKIYVGDVVKFYPKASVAEVKVVAHPLKVGDTIHIIGETTGLVRQKVESM
CCCCCCCCCCCCEEECHHHHHCCCCCHHEEEEEEEEECCCCEEEEEECCHHHHHHHHHHH
EIENQRIDQAEKGTAIGLKVNEKVREKDKVYIVKEK
HHHHHHCCHHHCCCEEEEEECHHHCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]