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The map label for this gene is ygcF [C]

Identifier: 195953034

GI number: 195953034

Start: 590869

End: 591507

Strand: Direct

Name: ygcF [C]

Synonym: HY04AAS1_0659

Alternate gene names: 195953034

Gene position: 590869-591507 (Clockwise)

Preceding gene: 195953033

Following gene: 195953035

Centisome position: 37.89

GC content: 31.77

Gene sequence:

>639_bases
ATGATAAATGAGGTTTTTTATTCTATACAAGGAGAAGGATTTTTGATAGGTACTCCCGCTTTGTTTGTGAGATTTCAAGG
GTGCAATTTAAGATGCGTTTGGTGTGATGAAAAAAATGCTTTAGATTTTGACAAAACCACAAAATCCTACACCAAAGCGA
TAGAAGAAATAGAAGATATACTAGCTGCCCATAATCCATCTTTAATAGTACTAACGGGCGGTGAACCTCTTTTAAACGAA
GATTTTATAAATATTTTTTCTTATTTTAAAAGCCTAGATAAAACAATACAAATAGAAACAAACGCCACAATCTTAAAAGA
CGATATAGAAACACTCTTTAAAACCTATGCAAGAACTTACATTACGTTATCGCCAAAATACATATCAAACTATATCATAC
ATCCGAAGTTTTTGGCTTTTGATAAAAACATAGAGTTAAAGATAGTGGTAGATGAGCATTTGAATGAAGGCATTTTAGAA
AGAGAGTACATGAAGCCCTTTATAGAAAAAGGGTTGTTGATACTACAGCCTCTGTGGGAAAATGGAAACGTGAAGTTTCT
TGATAAAGCAATAAAGCTAGCAGAAAAATTCAACACTAGAATAATACCACAAATGCACAAACTTTTAGGTTTAAAATAA

Upstream 100 bases:

>100_bases
ACAAAGCGGTAGATATAGAAGAAGAAATACCACCGGAGTTCTACAAAGCTGTAGCCGAAATAATAGCTTATATAGTAAAA
AGAAAACAGCGTGGTCTCTT

Downstream 100 bases:

>100_bases
TGGAAATAAAGATATACACGGACGGAAGTTGTTTGGGAAACCCAGGAGCAGGTGGTTACTGTGCCATATTAAAAGCCATA
AAAAATGGCAAAGTAGTAAA

Product: Radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MINEVFYSIQGEGFLIGTPALFVRFQGCNLRCVWCDEKNALDFDKTTKSYTKAIEEIEDILAAHNPSLIVLTGGEPLLNE
DFINIFSYFKSLDKTIQIETNATILKDDIETLFKTYARTYITLSPKYISNYIIHPKFLAFDKNIELKIVVDEHLNEGILE
REYMKPFIEKGLLILQPLWENGNVKFLDKAIKLAEKFNTRIIPQMHKLLGLK

Sequences:

>Translated_212_residues
MINEVFYSIQGEGFLIGTPALFVRFQGCNLRCVWCDEKNALDFDKTTKSYTKAIEEIEDILAAHNPSLIVLTGGEPLLNE
DFINIFSYFKSLDKTIQIETNATILKDDIETLFKTYARTYITLSPKYISNYIIHPKFLAFDKNIELKIVVDEHLNEGILE
REYMKPFIEKGLLILQPLWENGNVKFLDKAIKLAEKFNTRIIPQMHKLLGLK
>Mature_212_residues
MINEVFYSIQGEGFLIGTPALFVRFQGCNLRCVWCDEKNALDFDKTTKSYTKAIEEIEDILAAHNPSLIVLTGGEPLLNE
DFINIFSYFKSLDKTIQIETNATILKDDIETLFKTYARTYITLSPKYISNYIIHPKFLAFDKNIELKIVVDEHLNEGILE
REYMKPFIEKGLLILQPLWENGNVKFLDKAIKLAEKFNTRIIPQMHKLLGLK

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygcF and H.influenzae HI_1189 [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=232, Percent_Identity=28.0172413793103, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 24514; Mature: 24514

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINEVFYSIQGEGFLIGTPALFVRFQGCNLRCVWCDEKNALDFDKTTKSYTKAIEEIEDI
CCCCEEEEECCCEEEEECCEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
LAAHNPSLIVLTGGEPLLNEDFINIFSYFKSLDKTIQIETNATILKDDIETLFKTYARTY
HHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEECCCEEEHHHHHHHHHHHHHHE
ITLSPKYISNYIIHPKFLAFDKNIELKIVVDEHLNEGILEREYMKPFIEKGLLILQPLWE
EEECHHHHHCEECCCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHCCEEEEEEECC
NGNVKFLDKAIKLAEKFNTRIIPQMHKLLGLK
CCCEEHHHHHHHHHHHHCCCHHHHHHHHHCCC
>Mature Secondary Structure
MINEVFYSIQGEGFLIGTPALFVRFQGCNLRCVWCDEKNALDFDKTTKSYTKAIEEIEDI
CCCCEEEEECCCEEEEECCEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
LAAHNPSLIVLTGGEPLLNEDFINIFSYFKSLDKTIQIETNATILKDDIETLFKTYARTY
HHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEECCCEEEHHHHHHHHHHHHHHE
ITLSPKYISNYIIHPKFLAFDKNIELKIVVDEHLNEGILEREYMKPFIEKGLLILQPLWE
EEECHHHHHCEECCCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHCCEEEEEEECC
NGNVKFLDKAIKLAEKFNTRIIPQMHKLLGLK
CCCEEHHHHHHHHHHHHCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438 [H]