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The map label for this gene is fliR [H]

Identifier: 195953032

GI number: 195953032

Start: 589051

End: 589827

Strand: Direct

Name: fliR [H]

Synonym: HY04AAS1_0657

Alternate gene names: 195953032

Gene position: 589051-589827 (Clockwise)

Preceding gene: 195953031

Following gene: 195953033

Centisome position: 37.77

GC content: 31.66

Gene sequence:

>777_bases
ATGACGTTAAGTATATCTATACCATATCTCATAACGTTCTTACTTATAACGCTTAGAATATCTTCTATAGTATTTTTAGC
ACCGATTTTTGGGGATTTGCCAAACAGCTTTAAGATATTTTTTGTGATAGCTTTTAGTGTATCGCTTTATTATTACAACC
CTGTAAAACCAGTCTATACAGATAGTTTTATAATATTAACACTGATGGCTTTGAAAGAATTTAGCTTGGGTTTTATTATA
AGCTTGATACTAAGATTCTTAGTAGATATTTTCTTTGTTTTTGGAGAATTCGTGTCTAGTTCTCTTGGATTGTCAAACGC
CACTATCTTAAATCCGCTTATGGGAAATTCTACAATTTTGGGCACATACTTTAGTTATTTTTTCATGGGGCTTTTCGCAG
CATCATCTGGTTTTGAATATATTTACTTTATTCTATCGGAAAGCCTTAAGAGTATACCGCTTGGAGTCTTTGATCTATAC
AACATGAGACCTGAGTTTATATTAAATATCTTTTATAAAAGCTTTTATACTGCTTTTCAATTAGCTCTTCCTATGATAGC
TATAGGTCTTGTGATGAATATAATTCTAGCAGCTATCAATAGGCTTATACCTCAGATAAACGTTTTCATGGTAGGCATGC
CACTTCAAACACTTATAGGTATGATATTTTTGTTGCTTATTTTCCCTCTATTAGGGATACTTATGCACCAAATATTTGAA
CATTATTTTAAATTTATGCTAGAGTTTACAAGGGGTTATCATGGCCTCGGAAAATAA

Upstream 100 bases:

>100_bases
GCGTTTTTCGTAATATTCTTGCTTGGTAGTTGGATGATGAAACATATGGTAGATTATACAAAAGAAATCATCATCAATAT
ACCAAACTATATAAGATAAT

Downstream 100 bases:

>100_bases
AACAGAAAAAGCTACACCATATCGAAGAGGCAAGCTGAAATCGGAAGGTAACGTAGCAAAAAGCCAAGAAGTTGTATCTG
CCCTTTTGATGCTAGTTTCA

Product: type III secretion system inner membrane R protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MTLSISIPYLITFLLITLRISSIVFLAPIFGDLPNSFKIFFVIAFSVSLYYYNPVKPVYTDSFIILTLMALKEFSLGFII
SLILRFLVDIFFVFGEFVSSSLGLSNATILNPLMGNSTILGTYFSYFFMGLFAASSGFEYIYFILSESLKSIPLGVFDLY
NMRPEFILNIFYKSFYTAFQLALPMIAIGLVMNIILAAINRLIPQINVFMVGMPLQTLIGMIFLLLIFPLLGILMHQIFE
HYFKFMLEFTRGYHGLGK

Sequences:

>Translated_258_residues
MTLSISIPYLITFLLITLRISSIVFLAPIFGDLPNSFKIFFVIAFSVSLYYYNPVKPVYTDSFIILTLMALKEFSLGFII
SLILRFLVDIFFVFGEFVSSSLGLSNATILNPLMGNSTILGTYFSYFFMGLFAASSGFEYIYFILSESLKSIPLGVFDLY
NMRPEFILNIFYKSFYTAFQLALPMIAIGLVMNIILAAINRLIPQINVFMVGMPLQTLIGMIFLLLIFPLLGILMHQIFE
HYFKFMLEFTRGYHGLGK
>Mature_257_residues
TLSISIPYLITFLLITLRISSIVFLAPIFGDLPNSFKIFFVIAFSVSLYYYNPVKPVYTDSFIILTLMALKEFSLGFIIS
LILRFLVDIFFVFGEFVSSSLGLSNATILNPLMGNSTILGTYFSYFFMGLFAASSGFEYIYFILSESLKSIPLGVFDLYN
MRPEFILNIFYKSFYTAFQLALPMIAIGLVMNIILAAINRLIPQINVFMVGMPLQTLIGMIFLLLIFPLLGILMHQIFEH
YFKFMLEFTRGYHGLGK

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 29406; Mature: 29275

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSISIPYLITFLLITLRISSIVFLAPIFGDLPNSFKIFFVIAFSVSLYYYNPVKPVYT
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEECCCCCHHC
DSFIILTLMALKEFSLGFIISLILRFLVDIFFVFGEFVSSSLGLSNATILNPLMGNSTIL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHH
GTYFSYFFMGLFAASSGFEYIYFILSESLKSIPLGVFDLYNMRPEFILNIFYKSFYTAFQ
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHH
LALPMIAIGLVMNIILAAINRLIPQINVFMVGMPLQTLIGMIFLLLIFPLLGILMHQIFE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
HYFKFMLEFTRGYHGLGK
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TLSISIPYLITFLLITLRISSIVFLAPIFGDLPNSFKIFFVIAFSVSLYYYNPVKPVYT
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEECCCCCHHC
DSFIILTLMALKEFSLGFIISLILRFLVDIFFVFGEFVSSSLGLSNATILNPLMGNSTIL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHH
GTYFSYFFMGLFAASSGFEYIYFILSESLKSIPLGVFDLYNMRPEFILNIFYKSFYTAFQ
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHH
LALPMIAIGLVMNIILAAINRLIPQINVFMVGMPLQTLIGMIFLLLIFPLLGILMHQIFE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
HYFKFMLEFTRGYHGLGK
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]