| Definition | Hydrogenobaculum sp. Y04AAS1 chromosome, complete genome. |
|---|---|
| Accession | NC_011126 |
| Length | 1,559,514 |
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The map label for this gene is 195952492
Identifier: 195952492
GI number: 195952492
Start: 102331
End: 104379
Strand: Direct
Name: 195952492
Synonym: HY04AAS1_0112
Alternate gene names: NA
Gene position: 102331-104379 (Clockwise)
Preceding gene: 195952491
Following gene: 195952493
Centisome position: 6.56
GC content: 32.94
Gene sequence:
>2049_bases GTGCAGGCTCATAAGTACTTTGTAGTTCACGGACATTTTTATCAACCTATCAGGATAAGCCCGTCTTTAGGTGAAATTGG TTTAGAAGCATCCGCTTATCCTTATGAAAACTGGAACAAAAGAATACTTAGAGAATGTTATCTTCCAAACGCTTACGCTC ACATAAAAGAAGATGAGTTGGTGATAGCTATAGTAAATAACTACGAAAATATCAGCTTCAACGTGGGTTATACGCTACTT AATTGGTTTGAAAAGCATGAGCCTTATATTCTTGATATTCTTAAGAAAAGCTCAAAGAACGCCTTAGCTTTGGCTTTTAA CCATACGATACTACCTTTAGATCCACGGTTTGATAAAGAGATACAGGTTTATTGGGGCATAAAAACCCATGAGTATTATT TTGGTGTTAAACCAAAAGGCATGTGGCTACCAGAGTGTGCTGTAGATTATGAGACGTTGGAAGTCTTTAAGGCTTTTGGT ATAGAGTATGTCATATTGGCTCCTCATCAGGTTTCCAACAAAACTTCTAAAAACTACGGTCATATAAAGCTAAAAAACGG TCAAATCAAGGTTTTTATATACGATGGTATAATCTCGGCAAAGGTTTCTTTTGAAGATCTTCTTACAGATGTAAAAAGAC TGGTGGATGCTTTCAAACAATCTGGAGATATTATTCCAATCGTTGCCACCGATGGAGAGACCTTTGGTCATCATAAAAAG TTTGGGGAGATGGGACTTGCTTATCTTTCAAAGCTTATACCTTTAAAAGCTCTAAATGATCTTGTAGAAGAGTTAAAAGA TTTTGATTATGAATTTAAATTGGTAGAAAATACCTCTTGGAGTTGTCCGCATGGAATAGAGCGCTGGCGAACCCATTGTG GTTGCAACTCTGGTGCTCATCCAGATTGGAATCAGTACTGGCGTGGTCCTTTGAGAGAGGCTTTAGAGTTTCTAAGACAA AAAGTCAGAGAAAATTTAGAAAATATAGCTAAAAAGTTTAAAATAGATTTAAAACAACTTTTATTTGAATACATAGATGT TATTCTTGGTGTAAAGGATACAGAAGAGTTTTTGAAAGAAAAAGGCATTGACGATGAAGAGTATAAGCTTGCTTTTGCCA AACTTCTAAACGCTTATAAATGTGTACAGTTCTCATTCTCTTCAGATGCTTGGTTTTTTGACGACGTATCTGGAGTTGAG GTAAAACACGCTCTTGATATGGCAAAGTATGCAATATACTTGTTAAAAGACTATGAAGACATTGAGATACCTTTTATAAA CATTCTGCAAAATGCCAAAGGCAATACCAAGGAAAGACCTACCGCAAAAGATGTGTATATAAAAGATGCCAAGGTTTACA CCCTTGAAGATGTAGCGTCTTATTTGGCTATTATGAATCACTACGGTTATATAAAGGACGAAGGGTATTTTGTTAAATTT TATTACAGAATTTCAATCTCTGGAAATTATATATATGTATTTTTAAAAGATAAAGAAACCCTTGAGCAAAATTCTTTTGA GTTTAATATAAAAGATTTAGATGTGTCTAATATGTTTGGGGCTTTTAAGAAGGATATAACGGAGTTTTTGATATACAATA CAATTAAAGAGAATATAAAGCATTACGAAGAGCTTATAAAACAAATTATCTCAAATATATCACACATAGAAGTCCTTTCT CCATTTTTAAAACAGCAAAAAGCTTTTATAGAGCAAATAGCAAAGAATGTTTTACTTTATATGTTAAAACAAAACTACGA TATAGAAGATATTGTTTCTTTTTATATTGAGCTTGTAAATTTCGGTGTGAATTTAAAATCTGTTTACATTACAAAAGAAG CTAGTAAATATCTATATAGAAAGGCAAAAGAGTTGCCAAACAACGAAGACGAATTTTTAAAGATACTTGGTTTTGTAAAA CTTTATAACAAAGATGAAAAAGATTACAGTCTTATGATAGGTATATGGGATACTCAAAATGAAGTATGGGCTAAGAAAGA CCTTATAAAAAATAAATCTATTTTGGATGCACTTCACATAGCCTATTGA
Upstream 100 bases:
>100_bases TTACAATCAAGAGTGTTTATATGGTTTTTGAGGGGGAAAGAAGGTAGCATTGTAAAAGATAAAAAAACATTGAAGATGCT ATTTGAGGAGGGGTTGTTTG
Downstream 100 bases:
>100_bases TGTAAAATATTTGTATGTACAGTCAACCGGACGAAAAAGGTTATTTTAAAGAAGGAGATATAGCTTTTGGTGGAAGGTTT TTGCCTGAAACATTGATGTA
Product: glycoside hydrolase family 57
Products: NA
Alternate protein names: Glycoside Hydrolase Family Protein; Glycosyl Hydrolase Family; Glycosy Hydrolase Family Protein; Glycoside Hydrolase; Family; 4-Alpha-Glucanotransferase
Number of amino acids: Translated: 682; Mature: 682
Protein sequence:
>682_residues MQAHKYFVVHGHFYQPIRISPSLGEIGLEASAYPYENWNKRILRECYLPNAYAHIKEDELVIAIVNNYENISFNVGYTLL NWFEKHEPYILDILKKSSKNALALAFNHTILPLDPRFDKEIQVYWGIKTHEYYFGVKPKGMWLPECAVDYETLEVFKAFG IEYVILAPHQVSNKTSKNYGHIKLKNGQIKVFIYDGIISAKVSFEDLLTDVKRLVDAFKQSGDIIPIVATDGETFGHHKK FGEMGLAYLSKLIPLKALNDLVEELKDFDYEFKLVENTSWSCPHGIERWRTHCGCNSGAHPDWNQYWRGPLREALEFLRQ KVRENLENIAKKFKIDLKQLLFEYIDVILGVKDTEEFLKEKGIDDEEYKLAFAKLLNAYKCVQFSFSSDAWFFDDVSGVE VKHALDMAKYAIYLLKDYEDIEIPFINILQNAKGNTKERPTAKDVYIKDAKVYTLEDVASYLAIMNHYGYIKDEGYFVKF YYRISISGNYIYVFLKDKETLEQNSFEFNIKDLDVSNMFGAFKKDITEFLIYNTIKENIKHYEELIKQIISNISHIEVLS PFLKQQKAFIEQIAKNVLLYMLKQNYDIEDIVSFYIELVNFGVNLKSVYITKEASKYLYRKAKELPNNEDEFLKILGFVK LYNKDEKDYSLMIGIWDTQNEVWAKKDLIKNKSILDALHIAY
Sequences:
>Translated_682_residues MQAHKYFVVHGHFYQPIRISPSLGEIGLEASAYPYENWNKRILRECYLPNAYAHIKEDELVIAIVNNYENISFNVGYTLL NWFEKHEPYILDILKKSSKNALALAFNHTILPLDPRFDKEIQVYWGIKTHEYYFGVKPKGMWLPECAVDYETLEVFKAFG IEYVILAPHQVSNKTSKNYGHIKLKNGQIKVFIYDGIISAKVSFEDLLTDVKRLVDAFKQSGDIIPIVATDGETFGHHKK FGEMGLAYLSKLIPLKALNDLVEELKDFDYEFKLVENTSWSCPHGIERWRTHCGCNSGAHPDWNQYWRGPLREALEFLRQ KVRENLENIAKKFKIDLKQLLFEYIDVILGVKDTEEFLKEKGIDDEEYKLAFAKLLNAYKCVQFSFSSDAWFFDDVSGVE VKHALDMAKYAIYLLKDYEDIEIPFINILQNAKGNTKERPTAKDVYIKDAKVYTLEDVASYLAIMNHYGYIKDEGYFVKF YYRISISGNYIYVFLKDKETLEQNSFEFNIKDLDVSNMFGAFKKDITEFLIYNTIKENIKHYEELIKQIISNISHIEVLS PFLKQQKAFIEQIAKNVLLYMLKQNYDIEDIVSFYIELVNFGVNLKSVYITKEASKYLYRKAKELPNNEDEFLKILGFVK LYNKDEKDYSLMIGIWDTQNEVWAKKDLIKNKSILDALHIAY >Mature_682_residues MQAHKYFVVHGHFYQPIRISPSLGEIGLEASAYPYENWNKRILRECYLPNAYAHIKEDELVIAIVNNYENISFNVGYTLL NWFEKHEPYILDILKKSSKNALALAFNHTILPLDPRFDKEIQVYWGIKTHEYYFGVKPKGMWLPECAVDYETLEVFKAFG IEYVILAPHQVSNKTSKNYGHIKLKNGQIKVFIYDGIISAKVSFEDLLTDVKRLVDAFKQSGDIIPIVATDGETFGHHKK FGEMGLAYLSKLIPLKALNDLVEELKDFDYEFKLVENTSWSCPHGIERWRTHCGCNSGAHPDWNQYWRGPLREALEFLRQ KVRENLENIAKKFKIDLKQLLFEYIDVILGVKDTEEFLKEKGIDDEEYKLAFAKLLNAYKCVQFSFSSDAWFFDDVSGVE VKHALDMAKYAIYLLKDYEDIEIPFINILQNAKGNTKERPTAKDVYIKDAKVYTLEDVASYLAIMNHYGYIKDEGYFVKF YYRISISGNYIYVFLKDKETLEQNSFEFNIKDLDVSNMFGAFKKDITEFLIYNTIKENIKHYEELIKQIISNISHIEVLS PFLKQQKAFIEQIAKNVLLYMLKQNYDIEDIVSFYIELVNFGVNLKSVYITKEASKYLYRKAKELPNNEDEFLKILGFVK LYNKDEKDYSLMIGIWDTQNEVWAKKDLIKNKSILDALHIAY
Specific function: Unknown
COG id: COG1449
COG function: function code G; Alpha-amylase/alpha-mannosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 79825; Mature: 79825
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQAHKYFVVHGHFYQPIRISPSLGEIGLEASAYPYENWNKRILRECYLPNAYAHIKEDEL CCCCEEEEEECCEECCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCE VIAIVNNYENISFNVGYTLLNWFEKHEPYILDILKKSSKNALALAFNHTILPLDPRFDKE EEEEECCCCEEEEECCHHHHHHHHHCCCCEEHHHHCCCCCEEEEEECCEEEECCCCCCCC IQVYWGIKTHEYYFGVKPKGMWLPECAVDYETLEVFKAFGIEYVILAPHQVSNKTSKNYG EEEEEEEEEEEEEEECCCCCCCCCHHHCCHHHHHHHHHCCCEEEEECCCHHCCCCCCCCC HIKLKNGQIKVFIYDGIISAKVSFEDLLTDVKRLVDAFKQSGDIIPIVATDGETFGHHKK EEEEECCEEEEEEECCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHH FGEMGLAYLSKLIPLKALNDLVEELKDFDYEFKLVENTSWSCPHGIERWRTHCGCNSGAH HHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCC PDWNQYWRGPLREALEFLRQKVRENLENIAKKFKIDLKQLLFEYIDVILGVKDTEEFLKE CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH KGIDDEEYKLAFAKLLNAYKCVQFSFSSDAWFFDDVSGVEVKHALDMAKYAIYLLKDYED CCCCCHHHHHHHHHHHHHHHEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHHEECCCC IEIPFINILQNAKGNTKERPTAKDVYIKDAKVYTLEDVASYLAIMNHYGYIKDEGYFVKF CCCHHHHHHHCCCCCCCCCCCCCCEEEECCEEEEHHHHHHHHHHHHHCCCEECCCEEEEE YYRISISGNYIYVFLKDKETLEQNSFEFNIKDLDVSNMFGAFKKDITEFLIYNTIKENIK EEEEEEECCEEEEEEECCHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH HYEELIKQIISNISHIEVLSPFLKQQKAFIEQIAKNVLLYMLKQNYDIEDIVSFYIELVN HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH FGVNLKSVYITKEASKYLYRKAKELPNNEDEFLKILGFVKLYNKDEKDYSLMIGIWDTQN CCCCEEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCC EVWAKKDLIKNKSILDALHIAY HHHHHHHHHCCHHHHHHHHHCC >Mature Secondary Structure MQAHKYFVVHGHFYQPIRISPSLGEIGLEASAYPYENWNKRILRECYLPNAYAHIKEDEL CCCCEEEEEECCEECCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCE VIAIVNNYENISFNVGYTLLNWFEKHEPYILDILKKSSKNALALAFNHTILPLDPRFDKE EEEEECCCCEEEEECCHHHHHHHHHCCCCEEHHHHCCCCCEEEEEECCEEEECCCCCCCC IQVYWGIKTHEYYFGVKPKGMWLPECAVDYETLEVFKAFGIEYVILAPHQVSNKTSKNYG EEEEEEEEEEEEEEECCCCCCCCCHHHCCHHHHHHHHHCCCEEEEECCCHHCCCCCCCCC HIKLKNGQIKVFIYDGIISAKVSFEDLLTDVKRLVDAFKQSGDIIPIVATDGETFGHHKK EEEEECCEEEEEEECCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHH FGEMGLAYLSKLIPLKALNDLVEELKDFDYEFKLVENTSWSCPHGIERWRTHCGCNSGAH HHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCC PDWNQYWRGPLREALEFLRQKVRENLENIAKKFKIDLKQLLFEYIDVILGVKDTEEFLKE CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH KGIDDEEYKLAFAKLLNAYKCVQFSFSSDAWFFDDVSGVEVKHALDMAKYAIYLLKDYED CCCCCHHHHHHHHHHHHHHHEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHHEECCCC IEIPFINILQNAKGNTKERPTAKDVYIKDAKVYTLEDVASYLAIMNHYGYIKDEGYFVKF CCCHHHHHHHCCCCCCCCCCCCCCEEEECCEEEEHHHHHHHHHHHHHCCCEECCCEEEEE YYRISISGNYIYVFLKDKETLEQNSFEFNIKDLDVSNMFGAFKKDITEFLIYNTIKENIK EEEEEEECCEEEEEEECCHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH HYEELIKQIISNISHIEVLSPFLKQQKAFIEQIAKNVLLYMLKQNYDIEDIVSFYIELVN HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH FGVNLKSVYITKEASKYLYRKAKELPNNEDEFLKILGFVKLYNKDEKDYSLMIGIWDTQN CCCCEEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCC EVWAKKDLIKNKSILDALHIAY HHHHHHHHHCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA