Definition Hydrogenobaculum sp. Y04AAS1 chromosome, complete genome.
Accession NC_011126
Length 1,559,514

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The map label for this gene is 195952492

Identifier: 195952492

GI number: 195952492

Start: 102331

End: 104379

Strand: Direct

Name: 195952492

Synonym: HY04AAS1_0112

Alternate gene names: NA

Gene position: 102331-104379 (Clockwise)

Preceding gene: 195952491

Following gene: 195952493

Centisome position: 6.56

GC content: 32.94

Gene sequence:

>2049_bases
GTGCAGGCTCATAAGTACTTTGTAGTTCACGGACATTTTTATCAACCTATCAGGATAAGCCCGTCTTTAGGTGAAATTGG
TTTAGAAGCATCCGCTTATCCTTATGAAAACTGGAACAAAAGAATACTTAGAGAATGTTATCTTCCAAACGCTTACGCTC
ACATAAAAGAAGATGAGTTGGTGATAGCTATAGTAAATAACTACGAAAATATCAGCTTCAACGTGGGTTATACGCTACTT
AATTGGTTTGAAAAGCATGAGCCTTATATTCTTGATATTCTTAAGAAAAGCTCAAAGAACGCCTTAGCTTTGGCTTTTAA
CCATACGATACTACCTTTAGATCCACGGTTTGATAAAGAGATACAGGTTTATTGGGGCATAAAAACCCATGAGTATTATT
TTGGTGTTAAACCAAAAGGCATGTGGCTACCAGAGTGTGCTGTAGATTATGAGACGTTGGAAGTCTTTAAGGCTTTTGGT
ATAGAGTATGTCATATTGGCTCCTCATCAGGTTTCCAACAAAACTTCTAAAAACTACGGTCATATAAAGCTAAAAAACGG
TCAAATCAAGGTTTTTATATACGATGGTATAATCTCGGCAAAGGTTTCTTTTGAAGATCTTCTTACAGATGTAAAAAGAC
TGGTGGATGCTTTCAAACAATCTGGAGATATTATTCCAATCGTTGCCACCGATGGAGAGACCTTTGGTCATCATAAAAAG
TTTGGGGAGATGGGACTTGCTTATCTTTCAAAGCTTATACCTTTAAAAGCTCTAAATGATCTTGTAGAAGAGTTAAAAGA
TTTTGATTATGAATTTAAATTGGTAGAAAATACCTCTTGGAGTTGTCCGCATGGAATAGAGCGCTGGCGAACCCATTGTG
GTTGCAACTCTGGTGCTCATCCAGATTGGAATCAGTACTGGCGTGGTCCTTTGAGAGAGGCTTTAGAGTTTCTAAGACAA
AAAGTCAGAGAAAATTTAGAAAATATAGCTAAAAAGTTTAAAATAGATTTAAAACAACTTTTATTTGAATACATAGATGT
TATTCTTGGTGTAAAGGATACAGAAGAGTTTTTGAAAGAAAAAGGCATTGACGATGAAGAGTATAAGCTTGCTTTTGCCA
AACTTCTAAACGCTTATAAATGTGTACAGTTCTCATTCTCTTCAGATGCTTGGTTTTTTGACGACGTATCTGGAGTTGAG
GTAAAACACGCTCTTGATATGGCAAAGTATGCAATATACTTGTTAAAAGACTATGAAGACATTGAGATACCTTTTATAAA
CATTCTGCAAAATGCCAAAGGCAATACCAAGGAAAGACCTACCGCAAAAGATGTGTATATAAAAGATGCCAAGGTTTACA
CCCTTGAAGATGTAGCGTCTTATTTGGCTATTATGAATCACTACGGTTATATAAAGGACGAAGGGTATTTTGTTAAATTT
TATTACAGAATTTCAATCTCTGGAAATTATATATATGTATTTTTAAAAGATAAAGAAACCCTTGAGCAAAATTCTTTTGA
GTTTAATATAAAAGATTTAGATGTGTCTAATATGTTTGGGGCTTTTAAGAAGGATATAACGGAGTTTTTGATATACAATA
CAATTAAAGAGAATATAAAGCATTACGAAGAGCTTATAAAACAAATTATCTCAAATATATCACACATAGAAGTCCTTTCT
CCATTTTTAAAACAGCAAAAAGCTTTTATAGAGCAAATAGCAAAGAATGTTTTACTTTATATGTTAAAACAAAACTACGA
TATAGAAGATATTGTTTCTTTTTATATTGAGCTTGTAAATTTCGGTGTGAATTTAAAATCTGTTTACATTACAAAAGAAG
CTAGTAAATATCTATATAGAAAGGCAAAAGAGTTGCCAAACAACGAAGACGAATTTTTAAAGATACTTGGTTTTGTAAAA
CTTTATAACAAAGATGAAAAAGATTACAGTCTTATGATAGGTATATGGGATACTCAAAATGAAGTATGGGCTAAGAAAGA
CCTTATAAAAAATAAATCTATTTTGGATGCACTTCACATAGCCTATTGA

Upstream 100 bases:

>100_bases
TTACAATCAAGAGTGTTTATATGGTTTTTGAGGGGGAAAGAAGGTAGCATTGTAAAAGATAAAAAAACATTGAAGATGCT
ATTTGAGGAGGGGTTGTTTG

Downstream 100 bases:

>100_bases
TGTAAAATATTTGTATGTACAGTCAACCGGACGAAAAAGGTTATTTTAAAGAAGGAGATATAGCTTTTGGTGGAAGGTTT
TTGCCTGAAACATTGATGTA

Product: glycoside hydrolase family 57

Products: NA

Alternate protein names: Glycoside Hydrolase Family Protein; Glycosyl Hydrolase Family; Glycosy Hydrolase Family Protein; Glycoside Hydrolase; Family; 4-Alpha-Glucanotransferase

Number of amino acids: Translated: 682; Mature: 682

Protein sequence:

>682_residues
MQAHKYFVVHGHFYQPIRISPSLGEIGLEASAYPYENWNKRILRECYLPNAYAHIKEDELVIAIVNNYENISFNVGYTLL
NWFEKHEPYILDILKKSSKNALALAFNHTILPLDPRFDKEIQVYWGIKTHEYYFGVKPKGMWLPECAVDYETLEVFKAFG
IEYVILAPHQVSNKTSKNYGHIKLKNGQIKVFIYDGIISAKVSFEDLLTDVKRLVDAFKQSGDIIPIVATDGETFGHHKK
FGEMGLAYLSKLIPLKALNDLVEELKDFDYEFKLVENTSWSCPHGIERWRTHCGCNSGAHPDWNQYWRGPLREALEFLRQ
KVRENLENIAKKFKIDLKQLLFEYIDVILGVKDTEEFLKEKGIDDEEYKLAFAKLLNAYKCVQFSFSSDAWFFDDVSGVE
VKHALDMAKYAIYLLKDYEDIEIPFINILQNAKGNTKERPTAKDVYIKDAKVYTLEDVASYLAIMNHYGYIKDEGYFVKF
YYRISISGNYIYVFLKDKETLEQNSFEFNIKDLDVSNMFGAFKKDITEFLIYNTIKENIKHYEELIKQIISNISHIEVLS
PFLKQQKAFIEQIAKNVLLYMLKQNYDIEDIVSFYIELVNFGVNLKSVYITKEASKYLYRKAKELPNNEDEFLKILGFVK
LYNKDEKDYSLMIGIWDTQNEVWAKKDLIKNKSILDALHIAY

Sequences:

>Translated_682_residues
MQAHKYFVVHGHFYQPIRISPSLGEIGLEASAYPYENWNKRILRECYLPNAYAHIKEDELVIAIVNNYENISFNVGYTLL
NWFEKHEPYILDILKKSSKNALALAFNHTILPLDPRFDKEIQVYWGIKTHEYYFGVKPKGMWLPECAVDYETLEVFKAFG
IEYVILAPHQVSNKTSKNYGHIKLKNGQIKVFIYDGIISAKVSFEDLLTDVKRLVDAFKQSGDIIPIVATDGETFGHHKK
FGEMGLAYLSKLIPLKALNDLVEELKDFDYEFKLVENTSWSCPHGIERWRTHCGCNSGAHPDWNQYWRGPLREALEFLRQ
KVRENLENIAKKFKIDLKQLLFEYIDVILGVKDTEEFLKEKGIDDEEYKLAFAKLLNAYKCVQFSFSSDAWFFDDVSGVE
VKHALDMAKYAIYLLKDYEDIEIPFINILQNAKGNTKERPTAKDVYIKDAKVYTLEDVASYLAIMNHYGYIKDEGYFVKF
YYRISISGNYIYVFLKDKETLEQNSFEFNIKDLDVSNMFGAFKKDITEFLIYNTIKENIKHYEELIKQIISNISHIEVLS
PFLKQQKAFIEQIAKNVLLYMLKQNYDIEDIVSFYIELVNFGVNLKSVYITKEASKYLYRKAKELPNNEDEFLKILGFVK
LYNKDEKDYSLMIGIWDTQNEVWAKKDLIKNKSILDALHIAY
>Mature_682_residues
MQAHKYFVVHGHFYQPIRISPSLGEIGLEASAYPYENWNKRILRECYLPNAYAHIKEDELVIAIVNNYENISFNVGYTLL
NWFEKHEPYILDILKKSSKNALALAFNHTILPLDPRFDKEIQVYWGIKTHEYYFGVKPKGMWLPECAVDYETLEVFKAFG
IEYVILAPHQVSNKTSKNYGHIKLKNGQIKVFIYDGIISAKVSFEDLLTDVKRLVDAFKQSGDIIPIVATDGETFGHHKK
FGEMGLAYLSKLIPLKALNDLVEELKDFDYEFKLVENTSWSCPHGIERWRTHCGCNSGAHPDWNQYWRGPLREALEFLRQ
KVRENLENIAKKFKIDLKQLLFEYIDVILGVKDTEEFLKEKGIDDEEYKLAFAKLLNAYKCVQFSFSSDAWFFDDVSGVE
VKHALDMAKYAIYLLKDYEDIEIPFINILQNAKGNTKERPTAKDVYIKDAKVYTLEDVASYLAIMNHYGYIKDEGYFVKF
YYRISISGNYIYVFLKDKETLEQNSFEFNIKDLDVSNMFGAFKKDITEFLIYNTIKENIKHYEELIKQIISNISHIEVLS
PFLKQQKAFIEQIAKNVLLYMLKQNYDIEDIVSFYIELVNFGVNLKSVYITKEASKYLYRKAKELPNNEDEFLKILGFVK
LYNKDEKDYSLMIGIWDTQNEVWAKKDLIKNKSILDALHIAY

Specific function: Unknown

COG id: COG1449

COG function: function code G; Alpha-amylase/alpha-mannosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 79825; Mature: 79825

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAHKYFVVHGHFYQPIRISPSLGEIGLEASAYPYENWNKRILRECYLPNAYAHIKEDEL
CCCCEEEEEECCEECCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCE
VIAIVNNYENISFNVGYTLLNWFEKHEPYILDILKKSSKNALALAFNHTILPLDPRFDKE
EEEEECCCCEEEEECCHHHHHHHHHCCCCEEHHHHCCCCCEEEEEECCEEEECCCCCCCC
IQVYWGIKTHEYYFGVKPKGMWLPECAVDYETLEVFKAFGIEYVILAPHQVSNKTSKNYG
EEEEEEEEEEEEEEECCCCCCCCCHHHCCHHHHHHHHHCCCEEEEECCCHHCCCCCCCCC
HIKLKNGQIKVFIYDGIISAKVSFEDLLTDVKRLVDAFKQSGDIIPIVATDGETFGHHKK
EEEEECCEEEEEEECCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHH
FGEMGLAYLSKLIPLKALNDLVEELKDFDYEFKLVENTSWSCPHGIERWRTHCGCNSGAH
HHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCC
PDWNQYWRGPLREALEFLRQKVRENLENIAKKFKIDLKQLLFEYIDVILGVKDTEEFLKE
CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
KGIDDEEYKLAFAKLLNAYKCVQFSFSSDAWFFDDVSGVEVKHALDMAKYAIYLLKDYED
CCCCCHHHHHHHHHHHHHHHEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHHEECCCC
IEIPFINILQNAKGNTKERPTAKDVYIKDAKVYTLEDVASYLAIMNHYGYIKDEGYFVKF
CCCHHHHHHHCCCCCCCCCCCCCCEEEECCEEEEHHHHHHHHHHHHHCCCEECCCEEEEE
YYRISISGNYIYVFLKDKETLEQNSFEFNIKDLDVSNMFGAFKKDITEFLIYNTIKENIK
EEEEEEECCEEEEEEECCHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
HYEELIKQIISNISHIEVLSPFLKQQKAFIEQIAKNVLLYMLKQNYDIEDIVSFYIELVN
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FGVNLKSVYITKEASKYLYRKAKELPNNEDEFLKILGFVKLYNKDEKDYSLMIGIWDTQN
CCCCEEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCC
EVWAKKDLIKNKSILDALHIAY
HHHHHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure
MQAHKYFVVHGHFYQPIRISPSLGEIGLEASAYPYENWNKRILRECYLPNAYAHIKEDEL
CCCCEEEEEECCEECCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCE
VIAIVNNYENISFNVGYTLLNWFEKHEPYILDILKKSSKNALALAFNHTILPLDPRFDKE
EEEEECCCCEEEEECCHHHHHHHHHCCCCEEHHHHCCCCCEEEEEECCEEEECCCCCCCC
IQVYWGIKTHEYYFGVKPKGMWLPECAVDYETLEVFKAFGIEYVILAPHQVSNKTSKNYG
EEEEEEEEEEEEEEECCCCCCCCCHHHCCHHHHHHHHHCCCEEEEECCCHHCCCCCCCCC
HIKLKNGQIKVFIYDGIISAKVSFEDLLTDVKRLVDAFKQSGDIIPIVATDGETFGHHKK
EEEEECCEEEEEEECCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHH
FGEMGLAYLSKLIPLKALNDLVEELKDFDYEFKLVENTSWSCPHGIERWRTHCGCNSGAH
HHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCC
PDWNQYWRGPLREALEFLRQKVRENLENIAKKFKIDLKQLLFEYIDVILGVKDTEEFLKE
CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
KGIDDEEYKLAFAKLLNAYKCVQFSFSSDAWFFDDVSGVEVKHALDMAKYAIYLLKDYED
CCCCCHHHHHHHHHHHHHHHEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHHEECCCC
IEIPFINILQNAKGNTKERPTAKDVYIKDAKVYTLEDVASYLAIMNHYGYIKDEGYFVKF
CCCHHHHHHHCCCCCCCCCCCCCCEEEECCEEEEHHHHHHHHHHHHHCCCEECCCEEEEE
YYRISISGNYIYVFLKDKETLEQNSFEFNIKDLDVSNMFGAFKKDITEFLIYNTIKENIK
EEEEEEECCEEEEEEECCHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
HYEELIKQIISNISHIEVLSPFLKQQKAFIEQIAKNVLLYMLKQNYDIEDIVSFYIELVN
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FGVNLKSVYITKEASKYLYRKAKELPNNEDEFLKILGFVKLYNKDEKDYSLMIGIWDTQN
CCCCEEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCC
EVWAKKDLIKNKSILDALHIAY
HHHHHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA