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The map label for this gene is fimY [H]

Identifier: 194738200

GI number: 194738200

Start: 598544

End: 599266

Strand: Reverse

Name: fimY [H]

Synonym: SeSA_A0595

Alternate gene names: 194738200

Gene position: 599266-598544 (Counterclockwise)

Preceding gene: 194735582

Following gene: 194734277

Centisome position: 12.73

GC content: 46.06

Gene sequence:

>723_bases
ATGCGCAGCGTACCACGCAGGGAAAGACACCGCCGTTTAAGAAATGCCAAAGACTGCGCCTGCCGTTATCACTCTCCAAC
GCCGCAGATATTTGATCGCCTTGAGTTACTGGACCAACAGCTTAATTATGCCTTGCCGGTTGGTATCATTTCCCAGGCAA
TAATTACAACTGATAACTACCTCGGCTATTCATTGAGTCACTACTTATTTTCCGGAAAACGTACCGCAGCATTCCGCTCA
TTAGATGACATTTCTTTGTGGATTGAAAAGGGGTCGCTCAGACAACTGATTGTAGATATGGAGACGCTACCTGTCTCCTG
TATTGAGGCGCTTAACCAGCTACGCGCGCTCAGTTGGCAACAAAGCGATATCCAGATTTACCTGCTGGTATCAGATAAAA
CCGCCGCTATAACACAGTTTATCCGTATGGCTGGGCGTTTTTTTGTTCTGTCACGACGACAAAATCTGGCTTCAGTACGC
GAAGCCTTGTTATCAGCCGCTAAACCTCGCTTATCGGAAAGCTTTAGCCGTACTGACTGGTTGATGATTGAAACTTTAGC
GCAAGGCGCCTCTTTAAAAGAAATAGCACGTCAGCAAAGCGTACCTTATCATCGTGTAGTTTACCGGCTTAAACAACTTA
TCACCCTCCTTAACCTTCCCCACAGGCAAAGCTTTCTTCGGCTGATCCAGCAGCTAAACGTTACTTTCCACGATATTTTT
TAA

Upstream 100 bases:

>100_bases
GCAACGAAGCATTGCTTTTTACGCTGGTGCAACGATGGGACAAGGTTATTTATGGCCAGCCATATTACCAGATATATATT
AGAGCAATGGAAAAAGCAGG

Downstream 100 bases:

>100_bases
CGGAGTAACGTTTTGGTGAATAAGATTTTTTAAGAAATTACTTATTTTCACTTCCATTAAATGTAAATATTTCACATAAA
ATTAATATTTACAACTCGTC

Product: fimbriae Y protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MRSVPRRERHRRLRNAKDCACRYHSPTPQIFDRLELLDQQLNYALPVGIISQAIITTDNYLGYSLSHYLFSGKRTAAFRS
LDDISLWIEKGSLRQLIVDMETLPVSCIEALNQLRALSWQQSDIQIYLLVSDKTAAITQFIRMAGRFFVLSRRQNLASVR
EALLSAAKPRLSESFSRTDWLMIETLAQGASLKEIARQQSVPYHRVVYRLKQLITLLNLPHRQSFLRLIQQLNVTFHDIF

Sequences:

>Translated_240_residues
MRSVPRRERHRRLRNAKDCACRYHSPTPQIFDRLELLDQQLNYALPVGIISQAIITTDNYLGYSLSHYLFSGKRTAAFRS
LDDISLWIEKGSLRQLIVDMETLPVSCIEALNQLRALSWQQSDIQIYLLVSDKTAAITQFIRMAGRFFVLSRRQNLASVR
EALLSAAKPRLSESFSRTDWLMIETLAQGASLKEIARQQSVPYHRVVYRLKQLITLLNLPHRQSFLRLIQQLNVTFHDIF
>Mature_240_residues
MRSVPRRERHRRLRNAKDCACRYHSPTPQIFDRLELLDQQLNYALPVGIISQAIITTDNYLGYSLSHYLFSGKRTAAFRS
LDDISLWIEKGSLRQLIVDMETLPVSCIEALNQLRALSWQQSDIQIYLLVSDKTAAITQFIRMAGRFFVLSRRQNLASVR
EALLSAAKPRLSESFSRTDWLMIETLAQGASLKEIARQQSVPYHRVVYRLKQLITLLNLPHRQSFLRLIQQLNVTFHDIF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011991 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27861; Mature: 27861

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSVPRRERHRRLRNAKDCACRYHSPTPQIFDRLELLDQQLNYALPVGIISQAIITTDNY
CCCCCHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
LGYSLSHYLFSGKRTAAFRSLDDISLWIEKGSLRQLIVDMETLPVSCIEALNQLRALSWQ
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
QSDIQIYLLVSDKTAAITQFIRMAGRFFVLSRRQNLASVREALLSAAKPRLSESFSRTDW
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
LMIETLAQGASLKEIARQQSVPYHRVVYRLKQLITLLNLPHRQSFLRLIQQLNVTFHDIF
HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHCC
>Mature Secondary Structure
MRSVPRRERHRRLRNAKDCACRYHSPTPQIFDRLELLDQQLNYALPVGIISQAIITTDNY
CCCCCHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
LGYSLSHYLFSGKRTAAFRSLDDISLWIEKGSLRQLIVDMETLPVSCIEALNQLRALSWQ
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
QSDIQIYLLVSDKTAAITQFIRMAGRFFVLSRRQNLASVREALLSAAKPRLSESFSRTDW
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
LMIETLAQGASLKEIARQQSVPYHRVVYRLKQLITLLNLPHRQSFLRLIQQLNVTFHDIF
HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1360005; 11677609 [H]