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The map label for this gene is rfaL [H]

Identifier: 194737936

GI number: 194737936

Start: 3783645

End: 3784859

Strand: Direct

Name: rfaL [H]

Synonym: SeSA_A3912

Alternate gene names: 194737936

Gene position: 3783645-3784859 (Clockwise)

Preceding gene: 194737435

Following gene: 194736070

Centisome position: 80.35

GC content: 38.6

Gene sequence:

>1215_bases
ATGCTAACCACATCATTAACGTTAAATAAAGAGAAATGGAAGCCGATCTGGAATAAAGCGCTGGTTTTTCTTTTTGTTGC
TACGTATTTTCTGGATGGTATTACGCGTTATAAACATTTGATAATCATACTTATGGTTATCACCGCGATTTATCAGGTCT
CACGCTCACCGAAAAGTTTCCCCCCTCTTTTCAAAAATAGCCTATTTTATAGCATAGCAGTATTATCATTAATCCTTGTT
TATTCCATACTCATATCGCCAGATATGAAAGGAAGTTTCAAGGAATTTGAAAATACGGTACTGGAGGGTTTCTTATTATA
TACTTTATTAATTCCCGTACTATTAAAAGATGAAACAAAAGAAACGGTTTCGAAAATAGTACTTTTCTCCTTTTTAACAA
GTTTAGGGCTTCGCTGCCTTGCAGAGAGTATTCTGTATATCGAGGACTATAATAAAGGGATTATGCCATTCATAAGCTAT
GCGCATCGACATATGTCCGATTCCATGGTTTTCTTATTTCCAGCATTATTGAATATTTGGCTGTTTAGAAAAAATGCAAT
TAAGTTGGTTTTTTTGGTGCTTAGCGCTATCTACCTTTTCTTTATCCTGGGAACCCTATCGCGAGGGGCATGGTTGGCGG
TGCTCATAGTAGGTGTTCTGTGGGCAATACTGAACCGCCAATGGAAGTTAATAGGAGTTGGTGCCATTTTATTAGCCATT
ATCGGCGCTTTGGTTATCACTCAACATAATAACAAACCAGACCCAGAACATTTACTGTATAAATTACAGCAGACAGATAG
CTCATATCGTTATACTAATGGAACCCAGGGTACCGCGTGGATACTGATTCAGGAAAACCCGATCAAGGGCTACGGCTATG
GTAATGATGTGTATGATAGTGTTTATAATAAACGCGTTGTCGATTATCCAACGTGGACCTTTAAAGAATCCATCGGTCCG
CATAATACCATCCTGTACATCTGGTTTAGTGCTGGCATATTGGGTCTGGCGAGCCTGGTCTATTTATACGGCGCTATCAT
CAGGGAAACAGCCAGCTCTACCTTCAGGAAAGTAGAGATAAGCCCCTACAATGCTCATCTTTTGCTATTTTTATCTTTCA
TTGGTTTTTATATCGTTCGTGGTAATTTTGAACAGGTCGATATTGCTCAAATTGGTATCATTACTGGTTTTCTGCTGGCG
CTAAGAAATAGATAA

Upstream 100 bases:

>100_bases
CTCACCAGAACAGAACCTGGCGAATTTAGATGCCACAAGCGTATTTGGAAAGATTCATTAAAGAGACTCTGTCTCATCCC
AAACCTATTGTGGAGAAAAG

Downstream 100 bases:

>100_bases
AAAAACGCGCTGATACTTATTACGGTATCAGCGCGTTTTCCATCATCAGGACTCAATCACTTATCAAACCAGCTTTTCAT
TTGTTCCTCGAAACGCTGCG

Product: O-antigen ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MLTTSLTLNKEKWKPIWNKALVFLFVATYFLDGITRYKHLIIILMVITAIYQVSRSPKSFPPLFKNSLFYSIAVLSLILV
YSILISPDMKGSFKEFENTVLEGFLLYTLLIPVLLKDETKETVSKIVLFSFLTSLGLRCLAESILYIEDYNKGIMPFISY
AHRHMSDSMVFLFPALLNIWLFRKNAIKLVFLVLSAIYLFFILGTLSRGAWLAVLIVGVLWAILNRQWKLIGVGAILLAI
IGALVITQHNNKPDPEHLLYKLQQTDSSYRYTNGTQGTAWILIQENPIKGYGYGNDVYDSVYNKRVVDYPTWTFKESIGP
HNTILYIWFSAGILGLASLVYLYGAIIRETASSTFRKVEISPYNAHLLLFLSFIGFYIVRGNFEQVDIAQIGIITGFLLA
LRNR

Sequences:

>Translated_404_residues
MLTTSLTLNKEKWKPIWNKALVFLFVATYFLDGITRYKHLIIILMVITAIYQVSRSPKSFPPLFKNSLFYSIAVLSLILV
YSILISPDMKGSFKEFENTVLEGFLLYTLLIPVLLKDETKETVSKIVLFSFLTSLGLRCLAESILYIEDYNKGIMPFISY
AHRHMSDSMVFLFPALLNIWLFRKNAIKLVFLVLSAIYLFFILGTLSRGAWLAVLIVGVLWAILNRQWKLIGVGAILLAI
IGALVITQHNNKPDPEHLLYKLQQTDSSYRYTNGTQGTAWILIQENPIKGYGYGNDVYDSVYNKRVVDYPTWTFKESIGP
HNTILYIWFSAGILGLASLVYLYGAIIRETASSTFRKVEISPYNAHLLLFLSFIGFYIVRGNFEQVDIAQIGIITGFLLA
LRNR
>Mature_404_residues
MLTTSLTLNKEKWKPIWNKALVFLFVATYFLDGITRYKHLIIILMVITAIYQVSRSPKSFPPLFKNSLFYSIAVLSLILV
YSILISPDMKGSFKEFENTVLEGFLLYTLLIPVLLKDETKETVSKIVLFSFLTSLGLRCLAESILYIEDYNKGIMPFISY
AHRHMSDSMVFLFPALLNIWLFRKNAIKLVFLVLSAIYLFFILGTLSRGAWLAVLIVGVLWAILNRQWKLIGVGAILLAI
IGALVITQHNNKPDPEHLLYKLQQTDSSYRYTNGTQGTAWILIQENPIKGYGYGNDVYDSVYNKRVVDYPTWTFKESIGP
HNTILYIWFSAGILGLASLVYLYGAIIRETASSTFRKVEISPYNAHLLLFLSFIGFYIVRGNFEQVDIAQIGIITGFLLA
LRNR

Specific function: Adds the O-antigen on the glucose(II) group of LPS [H]

COG id: COG3307

COG function: function code M; Lipid A core - O-antigen ligase and related enzymes

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the O-antigen polymerase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007016 [H]

Pfam domain/function: PF04932 Wzy_C [H]

EC number: NA

Molecular weight: Translated: 46085; Mature: 46085

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTTSLTLNKEKWKPIWNKALVFLFVATYFLDGITRYKHLIIILMVITAIYQVSRSPKSF
CCCCCEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PPLFKNSLFYSIAVLSLILVYSILISPDMKGSFKEFENTVLEGFLLYTLLIPVLLKDETK
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH
ETVSKIVLFSFLTSLGLRCLAESILYIEDYNKGIMPFISYAHRHMSDSMVFLFPALLNIW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
LFRKNAIKLVFLVLSAIYLFFILGTLSRGAWLAVLIVGVLWAILNRQWKLIGVGAILLAI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHH
IGALVITQHNNKPDPEHLLYKLQQTDSSYRYTNGTQGTAWILIQENPIKGYGYGNDVYDS
HHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHH
VYNKRVVDYPTWTFKESIGPHNTILYIWFSAGILGLASLVYLYGAIIRETASSTFRKVEI
HHCCCEECCCCCHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
SPYNAHLLLFLSFIGFYIVRGNFEQVDIAQIGIITGFLLALRNR
CCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLTTSLTLNKEKWKPIWNKALVFLFVATYFLDGITRYKHLIIILMVITAIYQVSRSPKSF
CCCCCEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PPLFKNSLFYSIAVLSLILVYSILISPDMKGSFKEFENTVLEGFLLYTLLIPVLLKDETK
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH
ETVSKIVLFSFLTSLGLRCLAESILYIEDYNKGIMPFISYAHRHMSDSMVFLFPALLNIW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
LFRKNAIKLVFLVLSAIYLFFILGTLSRGAWLAVLIVGVLWAILNRQWKLIGVGAILLAI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHH
IGALVITQHNNKPDPEHLLYKLQQTDSSYRYTNGTQGTAWILIQENPIKGYGYGNDVYDS
HHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHH
VYNKRVVDYPTWTFKESIGPHNTILYIWFSAGILGLASLVYLYGAIIRETASSTFRKVEI
HHCCCEECCCCCHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
SPYNAHLLLFLSFIGFYIVRGNFEQVDIAQIGIITGFLLALRNR
CCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1657881; 11677609 [H]