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The map label for this gene is yidZ

Identifier: 194737931

GI number: 194737931

Start: 3931244

End: 3932203

Strand: Direct

Name: yidZ

Synonym: SeSA_A4057

Alternate gene names: 194737931

Gene position: 3931244-3932203 (Clockwise)

Preceding gene: 194734845

Following gene: 194737587

Centisome position: 83.48

GC content: 54.27

Gene sequence:

>960_bases
ATGAAGAAATCCCTTACCAATCTCGATCTTAATCTGCTGTTATGCCTACAGTTACTCATGCAGGAGCGCAGCGTCACTAA
AGCTGCAAAACGGATGAACGTAACACCCTCTGCGGTCAGCAAATCGCTGGCGAAACTCCGGGCATGGTTTGACGATCCGC
TGTTCGTCAATACGCCGCTGGGCCTGGCGCCGACGCCGCTGATGGTCAGTATGGAGCAAAGTCTGGCGGACTGGATGCAG
ATGGGGAACCAACTGCTTGATAAGCCGCATCATCAAACGCCGCGCGGTTTAAAATTTGAGTTGGCGGCAGAGTCGCCGCT
GATGATGATTATGTTTAATTCACTGTCGCAGCAGATTTATCAGCGCTATCCGCAGGCTACCATTAAGGTTCGCAACTGGG
ATTATGACTCGCTGGAGGCGATTACGCGTGGGGAAGTCGATATCGGATTTACCGGACGCGAAAGCCATCCCCGCTCGCGA
GAATTGCTCAGTCTGTTGCCGCTCGCGATTGATTTTGAGGTGTTGTTTAGCGATTTGCCGTGGGTCTGGCTGCGGGAAGA
TCATCCGGCGCTGCGCGAAGCGTGGGATCTGGACACATTTCTGCGCTACCCGCATATCAGTATTTGCTGGGAGCAAAGCG
ATACCTGGGCGCTGGATGATGTCCTGCAAGAAATGGGACGCAAACGCCATATTGCGTTGAGCCTGCCGGGGTTCGAGCAG
TCGCTCTTTATGGCCGCCCAGCCGGATCACACCCTGATAGCAACCGCGCCGCGCTATTGCCAGCACTACAATCAGCTCCA
CCAGCTACCGTTAGTGGCGCGCCCCCTGCCTTTTGATGCGCAACAGCGGGAAAAGCTGATGGTGCCGTTTACCCTATTAT
GGCACAAACGTAATAGTCATAATCCCAAGATTGTGTGGCTACGACAGGCTATCAACACGCTCTGCCGTCGCCTTATCTGA

Upstream 100 bases:

>100_bases
ATCAGCGCGATGAATATGCTGATCGGGATTCTGATTGGTTGTAGCATAGTGAGTATTCTGCTGATCTTCTCCGTCACGCC
CAACAGGTCCGTAGCCGAGC

Downstream 100 bases:

>100_bases
CCACCTGCGTTGATAAATTAACCTTCCTCTTACCAGAAATATCACCGTCTGATTAAAGAACCTTCTGAAATTGAATTTTT
AGCGCGTAAAACCTGTCCAT

Product: DNA-binding transcriptional regulator YidZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MKKSLTNLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNTPLGLAPTPLMVSMEQSLADWMQ
MGNQLLDKPHHQTPRGLKFELAAESPLMMIMFNSLSQQIYQRYPQATIKVRNWDYDSLEAITRGEVDIGFTGRESHPRSR
ELLSLLPLAIDFEVLFSDLPWVWLREDHPALREAWDLDTFLRYPHISICWEQSDTWALDDVLQEMGRKRHIALSLPGFEQ
SLFMAAQPDHTLIATAPRYCQHYNQLHQLPLVARPLPFDAQQREKLMVPFTLLWHKRNSHNPKIVWLRQAINTLCRRLI

Sequences:

>Translated_319_residues
MKKSLTNLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNTPLGLAPTPLMVSMEQSLADWMQ
MGNQLLDKPHHQTPRGLKFELAAESPLMMIMFNSLSQQIYQRYPQATIKVRNWDYDSLEAITRGEVDIGFTGRESHPRSR
ELLSLLPLAIDFEVLFSDLPWVWLREDHPALREAWDLDTFLRYPHISICWEQSDTWALDDVLQEMGRKRHIALSLPGFEQ
SLFMAAQPDHTLIATAPRYCQHYNQLHQLPLVARPLPFDAQQREKLMVPFTLLWHKRNSHNPKIVWLRQAINTLCRRLI
>Mature_319_residues
MKKSLTNLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNTPLGLAPTPLMVSMEQSLADWMQ
MGNQLLDKPHHQTPRGLKFELAAESPLMMIMFNSLSQQIYQRYPQATIKVRNWDYDSLEAITRGEVDIGFTGRESHPRSR
ELLSLLPLAIDFEVLFSDLPWVWLREDHPALREAWDLDTFLRYPHISICWEQSDTWALDDVLQEMGRKRHIALSLPGFEQ
SLFMAAQPDHTLIATAPRYCQHYNQLHQLPLVARPLPFDAQQREKLMVPFTLLWHKRNSHNPKIVWLRQAINTLCRRLI

Specific function: Involved in anaerobic NO protection

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1790147, Length=314, Percent_Identity=85.9872611464968, Blast_Score=539, Evalue=1e-155,
Organism=Escherichia coli, GI87081766, Length=302, Percent_Identity=24.5033112582781, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786820, Length=71, Percent_Identity=45.0704225352113, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87081684, Length=322, Percent_Identity=21.7391304347826, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YIDZ_SALA4 (B5EYX8)

Other databases:

- EMBL:   CP001138
- RefSeq:   YP_002148782.1
- ProteinModelPortal:   B5EYX8
- GeneID:   6793411
- GenomeReviews:   CP001138_GR
- KEGG:   sea:SeAg_B4072
- HOGENOM:   HBG682110
- OMA:   MEQDLAD
- ProtClustDB:   PRK10216
- HAMAP:   MF_01607
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate

EC number: NA

Molecular weight: Translated: 37085; Mature: 37085

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSLTNLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNTPL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCC
GLAPTPLMVSMEQSLADWMQMGNQLLDKPHHQTPRGLKFELAAESPLMMIMFNSLSQQIY
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
QRYPQATIKVRNWDYDSLEAITRGEVDIGFTGRESHPRSRELLSLLPLAIDFEVLFSDLP
HHCCCCEEEEECCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
WVWLREDHPALREAWDLDTFLRYPHISICWEQSDTWALDDVLQEMGRKRHIALSLPGFEQ
EEEEECCCHHHHHHHCHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCH
SLFMAAQPDHTLIATAPRYCQHYNQLHQLPLVARPLPFDAQQREKLMVPFTLLWHKRNSH
HEEEECCCCCCEEECCHHHHHHHHHHHHCCCEECCCCCCHHHHCCEECCEEEEEECCCCC
NPKIVWLRQAINTLCRRLI
CCCEEEHHHHHHHHHHHCC
>Mature Secondary Structure
MKKSLTNLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNTPL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCC
GLAPTPLMVSMEQSLADWMQMGNQLLDKPHHQTPRGLKFELAAESPLMMIMFNSLSQQIY
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
QRYPQATIKVRNWDYDSLEAITRGEVDIGFTGRESHPRSRELLSLLPLAIDFEVLFSDLP
HHCCCCEEEEECCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
WVWLREDHPALREAWDLDTFLRYPHISICWEQSDTWALDDVLQEMGRKRHIALSLPGFEQ
EEEEECCCHHHHHHHCHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCH
SLFMAAQPDHTLIATAPRYCQHYNQLHQLPLVARPLPFDAQQREKLMVPFTLLWHKRNSH
HEEEECCCCCCEEECCHHHHHHHHHHHHCCCEECCCCCCHHHHCCEECCEEEEEECCCCC
NPKIVWLRQAINTLCRRLI
CCCEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA