Click here to switch to the map view.

The map label for this gene is yfeN [H]

Identifier: 194737923

GI number: 194737923

Start: 38774

End: 39535

Strand: Reverse

Name: yfeN [H]

Synonym: SeSA_A0038

Alternate gene names: 194737923

Gene position: 39535-38774 (Counterclockwise)

Preceding gene: 194734974

Following gene: 194736342

Centisome position: 0.84

GC content: 43.96

Gene sequence:

>762_bases
ATGAAAAATAAGAAATATATTAATAGTCTACTCGCCGCATGTGTTCTTTTCTCTTGCTTTAATAGCCAGGCAGCGGAATT
GAAACGCGTATACGGTAAACTTAGCTTCGGATATGGCGACTGGAATAAAGGCTTTGTCAATGTCGATCGCGGCGAAGTGT
GGAAAGCGGTAGCCGATTTCGGCGCCGTGTTTGACAGGGGCGAATTTGCATCATTTTATGAAATGAACGTGCTCAACCAT
CCTGTAGAAGGCCGTAACCATGTTACCCAATTTCTGGGACATTATAGGGTAGTAGAAGGCTCTAACTTTACCGCAATGAT
GAAACTCTATATGTCGATGGAGAATAAATTCGGTGATGAATTAAACATGATGTACGGGGTAGGTTATCTGGGTTTAACCA
GCCCATCAGGCTTTATTAAGCCCTATTTCGCTGTTCATAACTTATCGAACGATTATACCTCTAAAAAGTATGGACAGGCG
ACAGGCTTTAACGGTTATGTTCTCGGTTGGGTCGCGGCTTATAACTTCGATATGTTTAATGAAAAGTTCGTCATTTCAAA
CTGGAACGAAGTTGAAATGGATCGTAATGATGCCTACGCCGAACAGCAGGGTGGGAAGACCGGCCTGAACGGCGCGGTAA
CGTTTACATGGAAATTTATGCCGCGATGGACCGCCTCCGTCTCTTACCGTTACTTCAATAATAAATTGGGGTATGACGGC
TACGGCGACCGTATGAATTACCTGATCGGCTTCGAGTTTTAA

Upstream 100 bases:

>100_bases
ATATTTTTGAGACATCTATCACCTACGTATAAAAAGACACTCCTTAGAATTCGCTTCTTTACACAACATTTCACTGTGTT
TTTACCTCATGGAGTTGAGC

Downstream 100 bases:

>100_bases
TAATCAATAAACTTGATGAATATTACTTAAATTCCCCCGTTTGTAGTCGTGGATGACACGACTACAGGCATTGTTTTTCT
TTAATGTAGCGTAAATGGAT

Product: putative outer membrane/exported protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MKNKKYINSLLAACVLFSCFNSQAAELKRVYGKLSFGYGDWNKGFVNVDRGEVWKAVADFGAVFDRGEFASFYEMNVLNH
PVEGRNHVTQFLGHYRVVEGSNFTAMMKLYMSMENKFGDELNMMYGVGYLGLTSPSGFIKPYFAVHNLSNDYTSKKYGQA
TGFNGYVLGWVAAYNFDMFNEKFVISNWNEVEMDRNDAYAEQQGGKTGLNGAVTFTWKFMPRWTASVSYRYFNNKLGYDG
YGDRMNYLIGFEF

Sequences:

>Translated_253_residues
MKNKKYINSLLAACVLFSCFNSQAAELKRVYGKLSFGYGDWNKGFVNVDRGEVWKAVADFGAVFDRGEFASFYEMNVLNH
PVEGRNHVTQFLGHYRVVEGSNFTAMMKLYMSMENKFGDELNMMYGVGYLGLTSPSGFIKPYFAVHNLSNDYTSKKYGQA
TGFNGYVLGWVAAYNFDMFNEKFVISNWNEVEMDRNDAYAEQQGGKTGLNGAVTFTWKFMPRWTASVSYRYFNNKLGYDG
YGDRMNYLIGFEF
>Mature_253_residues
MKNKKYINSLLAACVLFSCFNSQAAELKRVYGKLSFGYGDWNKGFVNVDRGEVWKAVADFGAVFDRGEFASFYEMNVLNH
PVEGRNHVTQFLGHYRVVEGSNFTAMMKLYMSMENKFGDELNMMYGVGYLGLTSPSGFIKPYFAVHNLSNDYTSKKYGQA
TGFNGYVLGWVAAYNFDMFNEKFVISNWNEVEMDRNDAYAEQQGGKTGLNGAVTFTWKFMPRWTASVSYRYFNNKLGYDG
YGDRMNYLIGFEF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To V.parahaemolyticus ompK [H]

Homologues:

Organism=Escherichia coli, GI1788747, Length=137, Percent_Identity=45.985401459854, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018013 [H]

Pfam domain/function: PF03502 Channel_Tsx [H]

EC number: NA

Molecular weight: Translated: 28981; Mature: 28981

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKKYINSLLAACVLFSCFNSQAAELKRVYGKLSFGYGDWNKGFVNVDRGEVWKAVADF
CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHH
GAVFDRGEFASFYEMNVLNHPVEGRNHVTQFLGHYRVVEGSNFTAMMKLYMSMENKFGDE
HHHHCCCCCHHHEEHHHHCCCCCCHHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHCCCH
LNMMYGVGYLGLTSPSGFIKPYFAVHNLSNDYTSKKYGQATGFNGYVLGWVAAYNFDMFN
HHHHHCCCEEECCCCCCCCCHHHHEECCCCCCCCHHCCCCCCCCCEEEEEHHHHCCCCCC
EKFVISNWNEVEMDRNDAYAEQQGGKTGLNGAVTFTWKFMPRWTASVSYRYFNNKLGYDG
CEEEEECCCEEEECCCHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCC
YGDRMNYLIGFEF
CCCCEEEEEEECC
>Mature Secondary Structure
MKNKKYINSLLAACVLFSCFNSQAAELKRVYGKLSFGYGDWNKGFVNVDRGEVWKAVADF
CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHH
GAVFDRGEFASFYEMNVLNHPVEGRNHVTQFLGHYRVVEGSNFTAMMKLYMSMENKFGDE
HHHHCCCCCHHHEEHHHHCCCCCCHHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHCCCH
LNMMYGVGYLGLTSPSGFIKPYFAVHNLSNDYTSKKYGQATGFNGYVLGWVAAYNFDMFN
HHHHHCCCEEECCCCCCCCCHHHHEECCCCCCCCHHCCCCCCCCCEEEEEHHHHCCCCCC
EKFVISNWNEVEMDRNDAYAEQQGGKTGLNGAVTFTWKFMPRWTASVSYRYFNNKLGYDG
CEEEEECCCEEEECCCHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCC
YGDRMNYLIGFEF
CCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7559336; 9205837; 9278503 [H]