Click here to switch to the map view.

The map label for this gene is lytS [H]

Identifier: 194737883

GI number: 194737883

Start: 3440113

End: 3440604

Strand: Reverse

Name: lytS [H]

Synonym: SeSA_A3564

Alternate gene names: 194737883

Gene position: 3440604-3440113 (Counterclockwise)

Preceding gene: 194737486

Following gene: 194733923

Centisome position: 73.06

GC content: 53.05

Gene sequence:

>492_bases
ATGGTGGCGAGCTATCGTAGCCAGGGGCGCTGGGTTATCTGGCTCTCGTTTCTTATTGCGCTGTTGCTGCAAATCATGCC
CTGGCCGGACGACATCATTGTTTTCCGGCCAAACTGGGTTTTGCTCATCTTACTGTACTGGATTCTGGCCCTGCCGCACC
GCGTAAATGTGGGGACGGGATTTGTGATGGGTGCCATACTTGATCTCATCAGCGGTTCCACACTTGGCGTGCGCGCTCTG
TCGATGAGTATTGTCGCCTACCTGGTCGCTCTGAAATTCCAGCTCTTCCGTAACCTGGCGCTCTGGCAGCAGGCGCTGGT
GGTAATGTTGCTTTCACTGGCCGTGGACATTATTGTTTTCTGGGCCGAGTTTTTAGTGATCAACGTCTCTTTCAGACCGG
AAGTGTTCTGGAGTAGTGTAGTCAATGGCGTGCTGTGGCCCTGGCTCTTTTTGCTGATGCGTAAAGTACGCCAGCAGTTT
GCTGTGCAATAA

Upstream 100 bases:

>100_bases
CGGGGATTACTCAGCCATCTGCGGGCCAGACTGCGCCGGTATCAACGCAACCATCGCCTTCGGGCGCGACCACGCCGCCT
GCGCGTGCGCCGGGAGGGTA

Downstream 100 bases:

>100_bases
AGGTCGATATGACAACTCTGTATCTTGCTTCCGGTTCCCCGCGTCGCCAGGAATTATTGACTCAACTTGGATTTTCATTC
GAGCAGGTCGTGCCTGGTAT

Product: rod shape-determining protein MreD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MVASYRSQGRWVIWLSFLIALLLQIMPWPDDIIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRAL
SMSIVAYLVALKFQLFRNLALWQQALVVMLLSLAVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWLFLLMRKVRQQF
AVQ

Sequences:

>Translated_163_residues
MVASYRSQGRWVIWLSFLIALLLQIMPWPDDIIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRAL
SMSIVAYLVALKFQLFRNLALWQQALVVMLLSLAVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWLFLLMRKVRQQF
AVQ
>Mature_163_residues
MVASYRSQGRWVIWLSFLIALLLQIMPWPDDIIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRAL
SMSIVAYLVALKFQLFRNLALWQQALVVMLLSLAVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWLFLLMRKVRQQF
AVQ

Specific function: Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins [H]

COG id: COG2891

COG function: function code M; Cell shape-determining protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mreD family [H]

Homologues:

Organism=Escherichia coli, GI1789647, Length=162, Percent_Identity=94.4444444444444, Blast_Score=283, Evalue=3e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007227 [H]

Pfam domain/function: PF04093 MreD [H]

EC number: NA

Molecular weight: Translated: 18818; Mature: 18818

Theoretical pI: Translated: 10.93; Mature: 10.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVASYRSQGRWVIWLSFLIALLLQIMPWPDDIIVFRPNWVLLILLYWILALPHRVNVGTG
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCHH
FVMGAILDLISGSTLGVRALSMSIVAYLVALKFQLFRNLALWQQALVVMLLSLAVDIIVF
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WAEFLVINVSFRPEVFWSSVVNGVLWPWLFLLMRKVRQQFAVQ
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVASYRSQGRWVIWLSFLIALLLQIMPWPDDIIVFRPNWVLLILLYWILALPHRVNVGTG
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCHH
FVMGAILDLISGSTLGVRALSMSIVAYLVALKFQLFRNLALWQQALVVMLLSLAVDIIVF
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WAEFLVINVSFRPEVFWSSVVNGVLWPWLFLLMRKVRQQFAVQ
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]