Click here to switch to the map view.

The map label for this gene is rlpA [H]

Identifier: 194737544

GI number: 194737544

Start: 773078

End: 774211

Strand: Reverse

Name: rlpA [H]

Synonym: SeSA_A0798

Alternate gene names: 194737544

Gene position: 774211-773078 (Counterclockwise)

Preceding gene: 194736655

Following gene: 194736722

Centisome position: 16.44

GC content: 60.85

Gene sequence:

>1134_bases
ATGCGTAAGCAGTTGCCTGTAATCTGCGTCGCGGCAGGGATAGTACTACTCGCGGCATGTACTAATGACGGCGGTCAGCA
GCAAACCACCGTCGCGCCGCAACCTGCGGTATGTAATGGTCCGACTGTGGAAATCAGCGGAGCGGAACCGCGTTATGAAC
CTCTGAATCCGACCGCAAACCAGGATTATCAGCGTGACGGTAAAAGTTATAAAATCGTTCAGGACCCGTCCCGCTTTAGC
CAGGCTGGCCTGGCCGCTATTTATGATGCGGAACCCGGCAGTAATTTAACCGCCTCCGGGGAGATGTTCGATCCGATGCA
GCTTACCGCCGCCCATCCGACACTGCCTATCCCCAGCTATGCGCGAATCACCAACCTGGCCAACGGTCGCATGATCGTCG
CGCGTATTAACGATCGCGGCCCCTATGGCACCGATCGGGTCATCTCCCTGTCCCGCGCGGCGGCGGATCGTCTGAATACC
TCGAATAATACTAAAGTACGGATTGACCCTATTATCGTGGCGCCGGATGGTTCGCTCTCCGGCCCGGGGATGGCCTGTAC
GACGGTGGCGAAACAGACCTACGCTCTGCCCCCGCGCCCTGATTTAAGCGGCGGAATGGGAAGCGCCTCTTCAGCGCCTG
CGCAACCGCAAGGCGACGTTCTTCCGGTCAGTAATTCCACGTTGAAAAGTGACGATACCACCGGTGCGCCAGTGAGCAGC
AGCGGCTTCCTCGGCGCGCCGACCACGCTGGCGCCTGGCGTGCTGGAGAGTAATGAACCGACGCCGGCGCCACAGCCAGC
GCCGGTTTCCGCGCCAGTGACGGCTCCAGCGACTGCGACGCCGGTGAGCGCGCCTGCCGCCGCAGCCCCGGTATCTGCCC
CGGTGAGCGCGCCTGCCGCCGCGGCGAGCGGTCGTTTCGTCGTCCAGGTCGGCGCCGTCAGCGATCAAACGCGCGCGCAG
CAGTACCAACAGCGTTTAAGCCAGCAGTTCAGCGTACCAGGACGCGTAATACAAAACGGCGCGGTCTGGCGTATTCAACT
GGGGCCTTTTGCCAGTAAAGCCGAAGCCAGCGCGTTACAGCAACGTTTGCAAACAGAAGCACAATTACAGTCCTTTATCG
CCAGCGCGCAGTAA

Upstream 100 bases:

>100_bases
GGGGGCTCCGCACTGATTGTGCTGATGGCCGGGTTCGGGATTGTGATGTCGATCCACACCCACAGAAAAATGTTGTCGAA
AAGCGTATAAGGGGTGCGCA

Downstream 100 bases:

>100_bases
CCGATCGCAGGTATCTGTACTGTCAATTTCTGTAAATGACATTAACAAAGTCACGCGGAAAGTCAGATGCCTGCCAGTTA
TGCTTTTGCTATAGTAGGGC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MRKQLPVICVAAGIVLLAACTNDGGQQQTTVAPQPAVCNGPTVEISGAEPRYEPLNPTANQDYQRDGKSYKIVQDPSRFS
QAGLAAIYDAEPGSNLTASGEMFDPMQLTAAHPTLPIPSYARITNLANGRMIVARINDRGPYGTDRVISLSRAAADRLNT
SNNTKVRIDPIIVAPDGSLSGPGMACTTVAKQTYALPPRPDLSGGMGSASSAPAQPQGDVLPVSNSTLKSDDTTGAPVSS
SGFLGAPTTLAPGVLESNEPTPAPQPAPVSAPVTAPATATPVSAPAAAAPVSAPVSAPAAAASGRFVVQVGAVSDQTRAQ
QYQQRLSQQFSVPGRVIQNGAVWRIQLGPFASKAEASALQQRLQTEAQLQSFIASAQ

Sequences:

>Translated_377_residues
MRKQLPVICVAAGIVLLAACTNDGGQQQTTVAPQPAVCNGPTVEISGAEPRYEPLNPTANQDYQRDGKSYKIVQDPSRFS
QAGLAAIYDAEPGSNLTASGEMFDPMQLTAAHPTLPIPSYARITNLANGRMIVARINDRGPYGTDRVISLSRAAADRLNT
SNNTKVRIDPIIVAPDGSLSGPGMACTTVAKQTYALPPRPDLSGGMGSASSAPAQPQGDVLPVSNSTLKSDDTTGAPVSS
SGFLGAPTTLAPGVLESNEPTPAPQPAPVSAPVTAPATATPVSAPAAAAPVSAPVSAPAAAASGRFVVQVGAVSDQTRAQ
QYQQRLSQQFSVPGRVIQNGAVWRIQLGPFASKAEASALQQRLQTEAQLQSFIASAQ
>Mature_377_residues
MRKQLPVICVAAGIVLLAACTNDGGQQQTTVAPQPAVCNGPTVEISGAEPRYEPLNPTANQDYQRDGKSYKIVQDPSRFS
QAGLAAIYDAEPGSNLTASGEMFDPMQLTAAHPTLPIPSYARITNLANGRMIVARINDRGPYGTDRVISLSRAAADRLNT
SNNTKVRIDPIIVAPDGSLSGPGMACTTVAKQTYALPPRPDLSGGMGSASSAPAQPQGDVLPVSNSTLKSDDTTGAPVSS
SGFLGAPTTLAPGVLESNEPTPAPQPAPVSAPVTAPATATPVSAPAAAAPVSAPVSAPAAAASGRFVVQVGAVSDQTRAQ
QYQQRLSQQFSVPGRVIQNGAVWRIQLGPFASKAEASALQQRLQTEAQLQSFIASAQ

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=377, Percent_Identity=80.9018567639257, Blast_Score=563, Evalue=1e-162,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 38770; Mature: 38770

Theoretical pI: Translated: 7.91; Mature: 7.91

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKQLPVICVAAGIVLLAACTNDGGQQQTTVAPQPAVCNGPTVEISGAEPRYEPLNPTAN
CCCCCCHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
QDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEMFDPMQLTAAHPTLPIPSY
CCHHHCCCCEEEEECHHHHHHCCEEEEEECCCCCCCEECCCCCCCEEEEECCCCCCCCCH
ARITNLANGRMIVARINDRGPYGTDRVISLSRAAADRLNTSNNTKVRIDPIIVAPDGSLS
HHHHHCCCCCEEEEEECCCCCCCCCHHEEHHHHHHHHCCCCCCCEEEEEEEEECCCCCCC
GPGMACTTVAKQTYALPPRPDLSGGMGSASSAPAQPQGDVLPVSNSTLKSDDTTGAPVSS
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
SGFLGAPTTLAPGVLESNEPTPAPQPAPVSAPVTAPATATPVSAPAAAAPVSAPVSAPAA
CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
AASGRFVVQVGAVSDQTRAQQYQQRLSQQFSVPGRVIQNGAVWRIQLGPFASKAEASALQ
HCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEECCCCEEEEEECCCCCHHHHHHHH
QRLQTEAQLQSFIASAQ
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRKQLPVICVAAGIVLLAACTNDGGQQQTTVAPQPAVCNGPTVEISGAEPRYEPLNPTAN
CCCCCCHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
QDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEMFDPMQLTAAHPTLPIPSY
CCHHHCCCCEEEEECHHHHHHCCEEEEEECCCCCCCEECCCCCCCEEEEECCCCCCCCCH
ARITNLANGRMIVARINDRGPYGTDRVISLSRAAADRLNTSNNTKVRIDPIIVAPDGSLS
HHHHHCCCCCEEEEEECCCCCCCCCHHEEHHHHHHHHCCCCCCCEEEEEEEEECCCCCCC
GPGMACTTVAKQTYALPPRPDLSGGMGSASSAPAQPQGDVLPVSNSTLKSDDTTGAPVSS
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
SGFLGAPTTLAPGVLESNEPTPAPQPAPVSAPVTAPATATPVSAPAAAAPVSAPVSAPAA
CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
AASGRFVVQVGAVSDQTRAQQYQQRLSQQFSVPGRVIQNGAVWRIQLGPFASKAEASALQ
HCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEECCCCEEEEEECCCCCHHHHHHHH
QRLQTEAQLQSFIASAQ
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]