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The map label for this gene is cspH [H]

Identifier: 194737414

GI number: 194737414

Start: 1297489

End: 1297701

Strand: Reverse

Name: cspH [H]

Synonym: SeSA_A1329

Alternate gene names: 194737414

Gene position: 1297701-1297489 (Counterclockwise)

Preceding gene: 194736821

Following gene: 194737875

Centisome position: 27.56

GC content: 46.48

Gene sequence:

>213_bases
TTGTCTCGTAAAATGACAGGAATTGTCAAAACCTTTGATTGTAAGAGCGGTAAAGGTCTCATCACCCCCTCCGATGGACG
CAAAGATGTTCAGGTCCACATTTCAGCATTTAGCCAACACGAAACAGAAGCGCTTATCCCCGGTATACGCGTTGAGTTTT
GTCGTATTAATGGCCTCCGCGGACCTACCGCCGCCAACGTTTATCTTTCATAA

Upstream 100 bases:

>100_bases
ACTTTTAGCCATCCGGAAATCTTGATTGCCATCAAATATAGCTGGCATTATTTTTCCTGACGTGTATAGTGCGCCCCGTT
ATCCCCATTAAGGAATTTGT

Downstream 100 bases:

>100_bases
TTCGTCCCTCGGCATTTTTTCAGAAAAATTTAGCGAGCCCGTATACCTCCGCAGTCTGCTATGAGGCTTTGTCTGAAAGG
CTGCAGAATGTTTTCAGTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISAFSQHETEALIPGIRVEFCRINGLRGPTAANVYLS

Sequences:

>Translated_70_residues
MSRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISAFSQHETEALIPGIRVEFCRINGLRGPTAANVYLS
>Mature_69_residues
SRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISAFSQHETEALIPGIRVEFCRINGLRGPTAANVYLS

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367112, Length=70, Percent_Identity=82.8571428571429, Blast_Score=124, Evalue=1e-30,
Organism=Escherichia coli, GI1787840, Length=70, Percent_Identity=77.1428571428572, Blast_Score=116, Evalue=3e-28,
Organism=Escherichia coli, GI2367114, Length=67, Percent_Identity=52.2388059701493, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1787839, Length=70, Percent_Identity=47.1428571428571, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=50.7462686567164, Blast_Score=67, Evalue=3e-13,
Organism=Escherichia coli, GI1787834, Length=67, Percent_Identity=49.2537313432836, Blast_Score=65, Evalue=6e-13,
Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=51.5625, Blast_Score=63, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7635; Mature: 7504

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISAFSQHETEALIPGIRVEFCRINGLR
CCCCCCCEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCC
GPTAANVYLS
CCCEEEEEEC
>Mature Secondary Structure 
SRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISAFSQHETEALIPGIRVEFCRINGLR
CCCCCCEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCC
GPTAANVYLS
CCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]