Click here to switch to the map view.

The map label for this gene is rhaB [H]

Identifier: 194737182

GI number: 194737182

Start: 4134357

End: 4135826

Strand: Reverse

Name: rhaB [H]

Synonym: SeSA_A4261

Alternate gene names: 194737182

Gene position: 4135826-4134357 (Counterclockwise)

Preceding gene: 194736245

Following gene: 194735576

Centisome position: 87.83

GC content: 54.83

Gene sequence:

>1470_bases
ATGACTTTTCGCCATTGTGTCGCGGTTGATCTCGGCGCATCCAGCGGGCGCGTGATGCTGGCGCGTTACGACAGCAAACA
CCGTACCCTGACGCTACGTGAAATTCACCGTTTTGTGAACTGCCTACAAAAAACAGACGGGTTTGACACCTGGGACATCG
ACAGTCTGGAAAAGGATATCCGTCTTGGTCTGAAGAAAGTCTGCAATGAAGGCATTCTTATCGACAGCATCGGCATCGAC
ACCTGGGGCGTCGATTATGTCCTGCTGGATAAACAAGGTCAGCGTGTCGGCCTGCCGGTATCCTACCGCGATAACCGTAC
CACGGGCATCATGTCGCAAGCGCTGGTCCAGATCGGCAAAAGCGAAATCTATCGCCGCAGCGGGATTCAGTTTCTGCCGT
TTAACACCATCTATCAGTTACGCGCGCTGACGAAGCAACAGCCTGAGTTAACGGCGCAGGTCGCTCATGCGCTGCTGATG
CCCGATTATTTCAGCTACCGCCTGACCGGTGAAATGAACTGGGAATACACCAACGCCACGACCACCCAATTGGTCAATAT
CAATACCGATGACTGGGACGATACCCTGCTGGCGTGGACTGGCGCGAAAAAGGGCTGGTTCGGCCGCCCCTCGCACCCTG
GCAATGTTATCGGCGACTGGATTTGCCCGCAGGGCAACCGTATTCCGGTGGTAGCCGTCGCCAGCCACGATACCGCCAGC
GCCGTTATTGCCTCTCCGCTGGCAAATAAACATAGCGCTTACCTGTCTTCAGGCACCTGGTCGTTGATGGGTTTTGAAAG
CAAAATGCCCTACACCACTGACGAGGCGCTGGCTGCCAATATCACCAACGAAGGCGGCGCAGAAGGGCGTTATCGGGTAC
TGAAAAACATTATGGGTTTGTGGCTGCTCCAGCGTGTGCTGAAAGAACGGCGCATTACCGATCTGCCTGCGCTTATTGCC
CAAACAGAAGCGCTGCCGGCCTGCCGTTTCCTGATTAACCCGAATGACGATCGCTTTATCAATCCTGACGATATGCGCGC
TGAAATCCAGGCCGCCTGTCGCGAGACCGACCAGCCCGTTCCCGTCAGCGATGCCGAACTGGCGCGCTGCATTTTCGACA
GTCTGGCGCTGTTGTATGCCGACATTCTGCACGAACTGGCAAATCTGCGCGGTGAAAAATTTACCCAACTGCATATTGTC
GGCGGCGGATGCCAAAACGCGCTACTCAACCAGTTGTGCGCCGATGCATGTGGTATTCGCGTGATGGCCGGGCCGGTTGA
AGCCTCCACCCTTGGCAATATTGGTATTCAGCTTATGACCCTCGACGAATTAAACAACGTCGATGACTTCCGTCAGGTCG
TCAGCGCTAACTACGACCTGACAACCTATATCCCTAATCCTGATAGTGAAATTGCCCGCCACGTTGCGCAGTTTCAACCC
AAACGACAGACAAAGGAGCTTTGCGCATGA

Upstream 100 bases:

>100_bases
TGCCTTGTTGCCAGCGGCTCATTTTCCTGTCAGTAACGAGAAGGTAGGTCTTTGAGGGCTTTTTTAGACTGTGCGCAATG
ACTCTAAGAAGGACCTGATT

Downstream 100 bases:

>100_bases
CCACTCAACTGGAACAAGCCTGGGAACTGGCAAAACAACGTTTCGCCGCAGTAGGTATTGATGTCGAGGAGGCGCTGCGC
CAGCTCGATCGCCTGCCGGT

Product: rhamnulokinase

Products: NA

Alternate protein names: Rhamnulose kinase [H]

Number of amino acids: Translated: 489; Mature: 488

Protein sequence:

>489_residues
MTFRHCVAVDLGASSGRVMLARYDSKHRTLTLREIHRFVNCLQKTDGFDTWDIDSLEKDIRLGLKKVCNEGILIDSIGID
TWGVDYVLLDKQGQRVGLPVSYRDNRTTGIMSQALVQIGKSEIYRRSGIQFLPFNTIYQLRALTKQQPELTAQVAHALLM
PDYFSYRLTGEMNWEYTNATTTQLVNINTDDWDDTLLAWTGAKKGWFGRPSHPGNVIGDWICPQGNRIPVVAVASHDTAS
AVIASPLANKHSAYLSSGTWSLMGFESKMPYTTDEALAANITNEGGAEGRYRVLKNIMGLWLLQRVLKERRITDLPALIA
QTEALPACRFLINPNDDRFINPDDMRAEIQAACRETDQPVPVSDAELARCIFDSLALLYADILHELANLRGEKFTQLHIV
GGGCQNALLNQLCADACGIRVMAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSANYDLTTYIPNPDSEIARHVAQFQP
KRQTKELCA

Sequences:

>Translated_489_residues
MTFRHCVAVDLGASSGRVMLARYDSKHRTLTLREIHRFVNCLQKTDGFDTWDIDSLEKDIRLGLKKVCNEGILIDSIGID
TWGVDYVLLDKQGQRVGLPVSYRDNRTTGIMSQALVQIGKSEIYRRSGIQFLPFNTIYQLRALTKQQPELTAQVAHALLM
PDYFSYRLTGEMNWEYTNATTTQLVNINTDDWDDTLLAWTGAKKGWFGRPSHPGNVIGDWICPQGNRIPVVAVASHDTAS
AVIASPLANKHSAYLSSGTWSLMGFESKMPYTTDEALAANITNEGGAEGRYRVLKNIMGLWLLQRVLKERRITDLPALIA
QTEALPACRFLINPNDDRFINPDDMRAEIQAACRETDQPVPVSDAELARCIFDSLALLYADILHELANLRGEKFTQLHIV
GGGCQNALLNQLCADACGIRVMAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSANYDLTTYIPNPDSEIARHVAQFQP
KRQTKELCA
>Mature_488_residues
TFRHCVAVDLGASSGRVMLARYDSKHRTLTLREIHRFVNCLQKTDGFDTWDIDSLEKDIRLGLKKVCNEGILIDSIGIDT
WGVDYVLLDKQGQRVGLPVSYRDNRTTGIMSQALVQIGKSEIYRRSGIQFLPFNTIYQLRALTKQQPELTAQVAHALLMP
DYFSYRLTGEMNWEYTNATTTQLVNINTDDWDDTLLAWTGAKKGWFGRPSHPGNVIGDWICPQGNRIPVVAVASHDTASA
VIASPLANKHSAYLSSGTWSLMGFESKMPYTTDEALAANITNEGGAEGRYRVLKNIMGLWLLQRVLKERRITDLPALIAQ
TEALPACRFLINPNDDRFINPDDMRAEIQAACRETDQPVPVSDAELARCIFDSLALLYADILHELANLRGEKFTQLHIVG
GGCQNALLNQLCADACGIRVMAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSANYDLTTYIPNPDSEIARHVAQFQPK
RQTKELCA

Specific function: Metabolism of L-rhamnose; second step. [C]

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnulokinase family [H]

Homologues:

Organism=Escherichia coli, GI1790338, Length=489, Percent_Identity=81.1860940695297, Blast_Score=843, Evalue=0.0,
Organism=Escherichia coli, GI1789168, Length=411, Percent_Identity=26.5206812652068, Blast_Score=99, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018484
- InterPro:   IPR013449 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.5 [H]

Molecular weight: Translated: 54508; Mature: 54377

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFRHCVAVDLGASSGRVMLARYDSKHRTLTLREIHRFVNCLQKTDGFDTWDIDSLEKDI
CCCCEEEEEEECCCCCEEEEEEECCCCCEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
RLGLKKVCNEGILIDSIGIDTWGVDYVLLDKQGQRVGLPVSYRDNRTTGIMSQALVQIGK
HHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCEECCCEEECCCCCHHHHHHHHHHHHH
SEIYRRSGIQFLPFNTIYQLRALTKQQPELTAQVAHALLMPDYFSYRLTGEMNWEYTNAT
HHHHHHCCCEECCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEECEEECCCC
TTQLVNINTDDWDDTLLAWTGAKKGWFGRPSHPGNVIGDWICPQGNRIPVVAVASHDTAS
EEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHH
AVIASPLANKHSAYLSSGTWSLMGFESKMPYTTDEALAANITNEGGAEGRYRVLKNIMGL
HHHHHHHCCCCHHHHCCCCEEEEEECCCCCCCCCHHHEEECCCCCCCCHHHHHHHHHHHH
WLLQRVLKERRITDLPALIAQTEALPACRFLINPNDDRFINPDDMRAEIQAACRETDQPV
HHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCC
PVSDAELARCIFDSLALLYADILHELANLRGEKFTQLHIVGGGCQNALLNQLCADACGIR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCE
VMAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSANYDLTTYIPNPDSEIARHVAQFQP
EEECCCCHHHHCCCCEEEEEHHHCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCC
KRQTKELCA
CHHHHHHCC
>Mature Secondary Structure 
TFRHCVAVDLGASSGRVMLARYDSKHRTLTLREIHRFVNCLQKTDGFDTWDIDSLEKDI
CCCEEEEEEECCCCCEEEEEEECCCCCEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
RLGLKKVCNEGILIDSIGIDTWGVDYVLLDKQGQRVGLPVSYRDNRTTGIMSQALVQIGK
HHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCEECCCEEECCCCCHHHHHHHHHHHHH
SEIYRRSGIQFLPFNTIYQLRALTKQQPELTAQVAHALLMPDYFSYRLTGEMNWEYTNAT
HHHHHHCCCEECCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEECEEECCCC
TTQLVNINTDDWDDTLLAWTGAKKGWFGRPSHPGNVIGDWICPQGNRIPVVAVASHDTAS
EEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHH
AVIASPLANKHSAYLSSGTWSLMGFESKMPYTTDEALAANITNEGGAEGRYRVLKNIMGL
HHHHHHHCCCCHHHHCCCCEEEEEECCCCCCCCCHHHEEECCCCCCCCHHHHHHHHHHHH
WLLQRVLKERRITDLPALIAQTEALPACRFLINPNDDRFINPDDMRAEIQAACRETDQPV
HHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCC
PVSDAELARCIFDSLALLYADILHELANLRGEKFTQLHIVGGGCQNALLNQLCADACGIR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCE
VMAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSANYDLTTYIPNPDSEIARHVAQFQP
EEECCCCHHHHCCCCEEEEEHHHCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCC
KRQTKELCA
CHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA