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The map label for this gene is yhcM [H]

Identifier: 194737049

GI number: 194737049

Start: 3411775

End: 3412899

Strand: Reverse

Name: yhcM [H]

Synonym: SeSA_A3538

Alternate gene names: 194737049

Gene position: 3412899-3411775 (Counterclockwise)

Preceding gene: 194734426

Following gene: 194737700

Centisome position: 72.47

GC content: 55.82

Gene sequence:

>1125_bases
ATGCAAAGCCTTTCCCCTACATCGCGTTATCTCCAGGCAATCAACGAAGGCACCCATCAGCCTGACGACGTACAGAAAGA
GGCGGTCGACCGTCTGGAAACCCTTTATCAGGCGCTCACCGCGAAAAAATCGTCGGCTACGCCACCCGGCGGTCTGATAG
CGCGACTGGGGAAATTATTAGGCAAAAACGAACCGGACGCGCAAATACCGGTTCGCGGGCTGTATATGTGGGGGGGCGTG
GGTCGCGGCAAAACATGGCTCATGGATCTCTTCTACCACAGCCTGCCGGGCGAGCGAAAACTACGTCTGCATTTTCATCG
GTTTATGCTGCGCGTGCATGAAGAACTTACCGCGTTACAGGGACAGATCGATCCGTTAGACATTATTGCCGATCGGTTTA
AAACCGAGACGGACGTACTGTGTTTCGATGAGTTTTTCGTCACCGATATTACCGACGCCATGCTGCTGGGCGGTTTAATG
AAGGCGCTGTTTGCACGCGGCATTACGCTGGTCGCGACCTCCAATATTCCGCCGGATGAACTCTACCGCAACGGTTTGCA
ACGCGCCCGCTTCCTGCCGGCTATCGATGCCATTAAACAGCACTGCGACATTATGAATGTGGACGCCGGCGTCGATTACC
GACTGCGGACGCTGACGCAGGCCCATTTATGGCTAACGCCGCTTAATGATGAAACCCGGCGGCAAATGGATAAACTGTGG
CTGGCGTTAGCGGGGCGCGCGCGCGCGCGCGCTCCGACGCTGGAAATCAATCATCGCCCTTTATCCACCCTGGGCGTTGA
AAACCAAACGCTAGCGGTCTCTTTCGCTACGCTGTGCGTCGAGGCCCGCAGCCAGCATGATTACATTGCGCTCTCAAGGT
TATTTCACACGGTTCTGCTGTTTGACGTGCCGGTCATGACGCCGCTGATGGAGAACGAAGCGCGCCGCTTTATTGCGCTG
GTGGATGAGTTTTACGAGCGCCACGTTAAGCTGGTGGTCAGCGCCGCCGCGCCGTTATATGAAATTTATCAGGGGGAGCG
GCTCAAGTTTGAATTTCAGCGCTGTCTGTCACGCCTGCAAGAGATGCAGAGTGCGGAGTACCTCAAGCGGGAGCATATGC
CGTAA

Upstream 100 bases:

>100_bases
GAAGTGGAATCCCGACAGCATATCGCGTAGTGTAGAACGGCCTTTTTTTCGTCAGCCGTGAACGACGGCACATCGATTTT
CAAGGAATAACAATAACATT

Downstream 100 bases:

>100_bases
GCCGGACAAGCGCAGCGCCCCGGCATTATGCGGTATTATATCTGTGCAACCTCCCCGACCGAGGGTGAACCAGGCCTGAA
CAAAACCCGCGGCAAATCGC

Product: ATPase, AFG1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MQSLSPTSRYLQAINEGTHQPDDVQKEAVDRLETLYQALTAKKSSATPPGGLIARLGKLLGKNEPDAQIPVRGLYMWGGV
GRGKTWLMDLFYHSLPGERKLRLHFHRFMLRVHEELTALQGQIDPLDIIADRFKTETDVLCFDEFFVTDITDAMLLGGLM
KALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDIMNVDAGVDYRLRTLTQAHLWLTPLNDETRRQMDKLW
LALAGRARARAPTLEINHRPLSTLGVENQTLAVSFATLCVEARSQHDYIALSRLFHTVLLFDVPVMTPLMENEARRFIAL
VDEFYERHVKLVVSAAAPLYEIYQGERLKFEFQRCLSRLQEMQSAEYLKREHMP

Sequences:

>Translated_374_residues
MQSLSPTSRYLQAINEGTHQPDDVQKEAVDRLETLYQALTAKKSSATPPGGLIARLGKLLGKNEPDAQIPVRGLYMWGGV
GRGKTWLMDLFYHSLPGERKLRLHFHRFMLRVHEELTALQGQIDPLDIIADRFKTETDVLCFDEFFVTDITDAMLLGGLM
KALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDIMNVDAGVDYRLRTLTQAHLWLTPLNDETRRQMDKLW
LALAGRARARAPTLEINHRPLSTLGVENQTLAVSFATLCVEARSQHDYIALSRLFHTVLLFDVPVMTPLMENEARRFIAL
VDEFYERHVKLVVSAAAPLYEIYQGERLKFEFQRCLSRLQEMQSAEYLKREHMP
>Mature_374_residues
MQSLSPTSRYLQAINEGTHQPDDVQKEAVDRLETLYQALTAKKSSATPPGGLIARLGKLLGKNEPDAQIPVRGLYMWGGV
GRGKTWLMDLFYHSLPGERKLRLHFHRFMLRVHEELTALQGQIDPLDIIADRFKTETDVLCFDEFFVTDITDAMLLGGLM
KALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDIMNVDAGVDYRLRTLTQAHLWLTPLNDETRRQMDKLW
LALAGRARARAPTLEINHRPLSTLGVENQTLAVSFATLCVEARSQHDYIALSRLFHTVLLFDVPVMTPLMENEARRFIAL
VDEFYERHVKLVVSAAAPLYEIYQGERLKFEFQRCLSRLQEMQSAEYLKREHMP

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=409, Percent_Identity=33.9853300733496, Blast_Score=222, Evalue=6e-58,
Organism=Escherichia coli, GI1789627, Length=373, Percent_Identity=84.9865951742627, Blast_Score=664, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17505769, Length=418, Percent_Identity=33.7320574162679, Blast_Score=241, Evalue=5e-64,
Organism=Saccharomyces cerevisiae, GI6320783, Length=406, Percent_Identity=30.2955665024631, Blast_Score=167, Evalue=4e-42,
Organism=Drosophila melanogaster, GI20129913, Length=425, Percent_Identity=32.2352941176471, Blast_Score=187, Evalue=1e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42716; Mature: 42716

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSLSPTSRYLQAINEGTHQPDDVQKEAVDRLETLYQALTAKKSSATPPGGLIARLGKLL
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
GKNEPDAQIPVRGLYMWGGVGRGKTWLMDLFYHSLPGERKLRLHFHRFMLRVHEELTALQ
CCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
GQIDPLDIIADRFKTETDVLCFDEFFVTDITDAMLLGGLMKALFARGITLVATSNIPPDE
CCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHH
LYRNGLQRARFLPAIDAIKQHCDIMNVDAGVDYRLRTLTQAHLWLTPLNDETRRQMDKLW
HHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHEEEECCCHHHHHHHHHHH
LALAGRARARAPTLEINHRPLSTLGVENQTLAVSFATLCVEARSQHDYIALSRLFHTVLL
HHHHCCHHCCCCEEEECCCCCHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
FDVPVMTPLMENEARRFIALVDEFYERHVKLVVSAAAPLYEIYQGERLKFEFQRCLSRLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EMQSAEYLKREHMP
HHHHHHHHHHCCCC
>Mature Secondary Structure
MQSLSPTSRYLQAINEGTHQPDDVQKEAVDRLETLYQALTAKKSSATPPGGLIARLGKLL
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
GKNEPDAQIPVRGLYMWGGVGRGKTWLMDLFYHSLPGERKLRLHFHRFMLRVHEELTALQ
CCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
GQIDPLDIIADRFKTETDVLCFDEFFVTDITDAMLLGGLMKALFARGITLVATSNIPPDE
CCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHH
LYRNGLQRARFLPAIDAIKQHCDIMNVDAGVDYRLRTLTQAHLWLTPLNDETRRQMDKLW
HHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHEEEECCCHHHHHHHHHHH
LALAGRARARAPTLEINHRPLSTLGVENQTLAVSFATLCVEARSQHDYIALSRLFHTVLL
HHHHCCHHCCCCEEEECCCCCHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
FDVPVMTPLMENEARRFIALVDEFYERHVKLVVSAAAPLYEIYQGERLKFEFQRCLSRLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EMQSAEYLKREHMP
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]