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The map label for this gene is ydbJ [H]

Identifier: 194736975

GI number: 194736975

Start: 1712324

End: 1712590

Strand: Reverse

Name: ydbJ [H]

Synonym: SeSA_A1769

Alternate gene names: 194736975

Gene position: 1712590-1712324 (Counterclockwise)

Preceding gene: 194735747

Following gene: 194737626

Centisome position: 36.37

GC content: 58.05

Gene sequence:

>267_bases
ATGCGCGCAGCGTTTTGGGTGGGGTGTGCCGCGTTATTATTGTCGGCTTGCAGTAGCGAACCTGTTCAGCAGGCAACCGC
GGCGCATGTTTCGCCAGGGATGAAAGCGGCGATGTCCAGCGCTGGCGAAGCGAATTGCGCTATGATTGGCGGTTCGCTTT
CAGCGGCCCGGCAGCTTGATGGTTCAGTAATTGGTATGTGCGCGCTACCCAACGGCAAACGTTGTAGCGAACAGTCGCTT
GCCGCCGGAAGCTGCGGGAGTTATTAA

Upstream 100 bases:

>100_bases
ATGAAGCGCATAAATGCGCGCTTTGCCTCTCGACGCGTCAGTTTCTGCTGCCTATTATTTAGGGCGGTGTCGTTTGGATG
AATAAACAGAGGGGAGAGAA

Downstream 100 bases:

>100_bases
GCGCGGCGTTTCGCCTGACGCGTATAACTTTTCACTTAATGGCTTAGTGCGCTAAATCCGCCAGTTTATACATTAGCGTT
GTTTCTGCCGTCGCCAGCGT

Product: putative cytoplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MRAAFWVGCAALLLSACSSEPVQQATAAHVSPGMKAAMSSAGEANCAMIGGSLSAARQLDGSVIGMCALPNGKRCSEQSL
AAGSCGSY

Sequences:

>Translated_88_residues
MRAAFWVGCAALLLSACSSEPVQQATAAHVSPGMKAAMSSAGEANCAMIGGSLSAARQLDGSVIGMCALPNGKRCSEQSL
AAGSCGSY
>Mature_88_residues
MRAAFWVGCAALLLSACSSEPVQQATAAHVSPGMKAAMSSAGEANCAMIGGSLSAARQLDGSVIGMCALPNGKRCSEQSL
AAGSCGSY

Specific function: Unknown

COG id: COG3042

COG function: function code R; Putative hemolysin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081894, Length=88, Percent_Identity=92.0454545454545, Blast_Score=164, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005590 [H]

Pfam domain/function: PF03891 DUF333 [H]

EC number: NA

Molecular weight: Translated: 8684; Mature: 8684

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.8 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
12.5 %Cys+Met (Translated Protein)
6.8 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
12.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAAFWVGCAALLLSACSSEPVQQATAAHVSPGMKAAMSSAGEANCAMIGGSLSAARQLD
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHCCCCCCEEEECCCHHHHHHCC
GSVIGMCALPNGKRCSEQSLAAGSCGSY
CCEEEEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRAAFWVGCAALLLSACSSEPVQQATAAHVSPGMKAAMSSAGEANCAMIGGSLSAARQLD
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHCCCCCCEEEECCCHHHHHHCC
GSVIGMCALPNGKRCSEQSLAAGSCGSY
CCEEEEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]