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The map label for this gene is yicJ [H]

Identifier: 194736843

GI number: 194736843

Start: 3831247

End: 3832629

Strand: Reverse

Name: yicJ [H]

Synonym: SeSA_A3957

Alternate gene names: 194736843

Gene position: 3832629-3831247 (Counterclockwise)

Preceding gene: 194734649

Following gene: 194737559

Centisome position: 81.39

GC content: 54.95

Gene sequence:

>1383_bases
ATGAAAAGTGAAATTCTCTCCGTTAAGGAGAAGATTGGCTATGGTATGGGCGATGCCGCGAGCCACATCATCTTTGATAA
CGTCATGTTATATATGATGTTCTTCTATACCGATATTTTCGGCATTCCTGCTGGTTTTGTCGGCACCATGTTTTTACTGG
CGCGTGCGCTTGATGCCATCTCCGACCCTTGCATGGGCCTGCTGGCCGACCGCACCCGCTCTCGCTGGGGCAAATTCCGA
CCCTGGGTGCTGTTTGGCGCGTTGCCGTTTGGTATCGTTTGTGTGCTGGCTTATAGCACGCCGGATCTCAGTCTGAACGG
CAAAATGATTTATGCCGCCATCACCTACACGTTGCTCACCCTTCTGTACACTGTGGTCAACATCCCTTACTGCGCGTTGG
GGGGGGTAATAACCAATGACCCAACGCAGCGTATCTCCCTGCAATCTTGGCGCTTTGTGCTGGCAACGGCGGGCGGAATG
CTCTCTACCGTACTGATGATGCCTCTGGTGAAACTGATTGGCGGCGAGAATAAGGCGCTGGGCTTCCAGGGGGGTATCGC
GGCGCTCTCGGTGGTGGCGTTCCTGATGCTGGCGTTCTGCTTCTTTACCACCAAAGAGCGCGTTGAAGCGCCTGCCACCC
ATACCTCCATGCGTGAAGACCTGCGTGATATCTGGCACAACGACCAGTGGCGCATAGTCGGCCTGCTCACCATCCTGAAT
ATTCTGGCGGTATGCGTGCGCGGCGGGGCGATGATGTATTACGTCACCTGGATATTGGGCAAGCCGGGCGTGTTTGTCGC
CTTCCTCACCACCTATTGCGTCGGCAACCTGATTGGCTCGGCGCTGGCAAAACCGTTGACCGACTGGAAATGCAAAGTGA
GCGTTTTCTGTTGGACCAACGCTTTACTCGCAGTAATCAGCGTGGCGATGTTCTTCGTACCGATGCACGCCACGATCGCT
ATGTTCGTCTTTATCTTCGTGATTGGCGTGTTGCACCAGTTAGTCACGCCTATCCAGTGGGTGATGATGTCTGACACCGT
CGACTATGGCGAATGGTGTAACGGCAAACGCCTGACGGGGATCAGTTTTGCCGGCACGTTGTTCGTGCTGAAACTGGGTC
TTGCCCTCGGCGGGGCGCTGATTGGCTGGATGCTGGCAGGCGGCGGTTACGACGCGGCGGCGAAAACGCAAAACAGCGCC
ACGATCAGCATCATCATCGCTCTGTTCACTATCGTCCCGGCCATCTGTTATCTGCTGAGCGCCGCGATCGCTAAACGCTA
CTACACCCTGAAAAGCCCGTTCCTGAAAACCATTCTGGAACAACTGGCGCAGGGCGCACACCGTAACGAACAAGAATTTC
CCCATAAAGAATTGCAGAACTAA

Upstream 100 bases:

>100_bases
GTAATTTGATAACTAAATAACGGAATATTCACGCTCGCAGGGAAGGTTTACAAAAACTGTAACCGGTATCAGTGAGTGTT
GTGAGCGTTAAGGATGCGTA

Downstream 100 bases:

>100_bases
AGGAACAGACTATGAAAATTAGCGACGGAAACTGGCTGATCCAGCCTGGCCTTAATTTGATTCACCCGGTTCAGGTGTTC
GACGTTGAACAGCAGGGGAA

Product: putative transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 460

Protein sequence:

>460_residues
MKSEILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAISDPCMGLLADRTRSRWGKFR
PWVLFGALPFGIVCVLAYSTPDLSLNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM
LSTVLMMPLVKLIGGENKALGFQGGIAALSVVAFLMLAFCFFTTKERVEAPATHTSMREDLRDIWHNDQWRIVGLLTILN
ILAVCVRGGAMMYYVTWILGKPGVFVAFLTTYCVGNLIGSALAKPLTDWKCKVSVFCWTNALLAVISVAMFFVPMHATIA
MFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSA
TISIIIALFTIVPAICYLLSAAIAKRYYTLKSPFLKTILEQLAQGAHRNEQEFPHKELQN

Sequences:

>Translated_460_residues
MKSEILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAISDPCMGLLADRTRSRWGKFR
PWVLFGALPFGIVCVLAYSTPDLSLNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM
LSTVLMMPLVKLIGGENKALGFQGGIAALSVVAFLMLAFCFFTTKERVEAPATHTSMREDLRDIWHNDQWRIVGLLTILN
ILAVCVRGGAMMYYVTWILGKPGVFVAFLTTYCVGNLIGSALAKPLTDWKCKVSVFCWTNALLAVISVAMFFVPMHATIA
MFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSA
TISIIIALFTIVPAICYLLSAAIAKRYYTLKSPFLKTILEQLAQGAHRNEQEFPHKELQN
>Mature_460_residues
MKSEILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAISDPCMGLLADRTRSRWGKFR
PWVLFGALPFGIVCVLAYSTPDLSLNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM
LSTVLMMPLVKLIGGENKALGFQGGIAALSVVAFLMLAFCFFTTKERVEAPATHTSMREDLRDIWHNDQWRIVGLLTILN
ILAVCVRGGAMMYYVTWILGKPGVFVAFLTTYCVGNLIGSALAKPLTDWKCKVSVFCWTNALLAVISVAMFFVPMHATIA
MFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSA
TISIIIALFTIVPAICYLLSAAIAKRYYTLKSPFLKTILEQLAQGAHRNEQEFPHKELQN

Specific function: Unknown

COG id: COG2211

COG function: function code G; Na+/melibiose symporter and related transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:galactoside symporter (TC 2.A.2) family [H]

Homologues:

Organism=Escherichia coli, GI87082306, Length=460, Percent_Identity=90.8695652173913, Blast_Score=836, Evalue=0.0,
Organism=Escherichia coli, GI1786466, Length=447, Percent_Identity=41.834451901566, Blast_Score=360, Evalue=1e-100,
Organism=Escherichia coli, GI1790561, Length=465, Percent_Identity=27.741935483871, Blast_Score=183, Evalue=2e-47,
Organism=Escherichia coli, GI145693206, Length=444, Percent_Identity=28.1531531531532, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI48994989, Length=462, Percent_Identity=29.4372294372294, Blast_Score=167, Evalue=9e-43,
Organism=Escherichia coli, GI1787902, Length=455, Percent_Identity=28.1318681318681, Blast_Score=162, Evalue=4e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016196
- InterPro:   IPR001927
- InterPro:   IPR018043 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50526; Mature: 50526

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS00872 NA_GALACTOSIDE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSEILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAI
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSLNGKMIYAAITYTLLT
CCHHHHHHHHHHHHHCCCCCCHHEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
LLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVKLIGGENKAL
HHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
GFQGGIAALSVVAFLMLAFCFFTTKERVEAPATHTSMREDLRDIWHNDQWRIVGLLTILN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
ILAVCVRGGAMMYYVTWILGKPGVFVAFLTTYCVGNLIGSALAKPLTDWKCKVSVFCWTN
HHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHH
ALLAVISVAMFFVPMHATIAMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEECC
ISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSATISIIIALFTIVPAICYLLS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AAIAKRYYTLKSPFLKTILEQLAQGAHRNEQEFPHKELQN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCC
>Mature Secondary Structure
MKSEILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAI
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSLNGKMIYAAITYTLLT
CCHHHHHHHHHHHHHCCCCCCHHEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
LLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVKLIGGENKAL
HHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
GFQGGIAALSVVAFLMLAFCFFTTKERVEAPATHTSMREDLRDIWHNDQWRIVGLLTILN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
ILAVCVRGGAMMYYVTWILGKPGVFVAFLTTYCVGNLIGSALAKPLTDWKCKVSVFCWTN
HHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHH
ALLAVISVAMFFVPMHATIAMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEECC
ISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSATISIIIALFTIVPAICYLLS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AAIAKRYYTLKSPFLKTILEQLAQGAHRNEQEFPHKELQN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]