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The map label for this gene is ydiB

Identifier: 194736749

GI number: 194736749

Start: 1404389

End: 1405255

Strand: Reverse

Name: ydiB

Synonym: SeSA_A1455

Alternate gene names: 194736749

Gene position: 1405255-1404389 (Counterclockwise)

Preceding gene: 194736393

Following gene: 194734603

Centisome position: 29.84

GC content: 48.21

Gene sequence:

>867_bases
ATGGATGTTACCGCAAAATATGAGTTAATTGGTCTTATGGCGTATCCTATCCGTCATAGCTTATCGCCCGAAATGCAAAA
CAAAGCGTTAGAAAAAGCGGGGCTACCCTATACCTATATGGCTTTCGAAGTGGATAACACGACGTTTGCCAGCGCCATTG
AAGGACTGAAAGCATTAAAAATGCGCGGTACGGGCGTCTCCATGCCAAACAAACAGCTCGCGTGTGAGTATGTCGATGAA
TTAACGCCAGCAGCAAAACTGGTTGGCGCTATCAACACCATTGTTAATGATGACGGCTATCTACGCGGCTACAATACGGA
TGGTACGGGCCATATTCGGGCAATTAAAGAAAGCGGTTTCGATATTCGGGGAAAAACCATGGTGCTGCTCGGCGCGGGAG
GCGCGGCTACCGCCATTGGCGCCCAGGCAGCCATTGAAGGCATTAAGGAAATTAAACTGTTTAACCGTAAAGATGACTTT
TTCGAAAAAGCGGTTGCCTTTGCGAAGCGGGTGAATGAAAACACCGATTGCGTCGTTACCGTCACCGATCTTGCCGATCA
GCACGCTTTTACTGAAGCGCTTGCCAGCGCAGATATTCTGACGAACGGTACCAAAGTTGGCATGAAACCATTGGAGAACG
AATCCCTGATCGGCGATGTTTCCCTGCTCCGCCCTGAATTGCTGGTCACCGAATGTGTTTATAATCCGCATATGACAAAG
TTATTGCAGCAGGCGCAACAAGCTGGTTGCAAAACAATTGATGGTTACGGCATGTTGTTATGGCAAGGAGCCGAACAGTT
TGAACTGTGGACAGGAAAAGCATTTCCATTGGACTATGTGAAGCAGGTGATGGGATTCACAGCCTGA

Upstream 100 bases:

>100_bases
CGATGTCCGATTTGGCGAGCGTTATTTCCAGTAAAAATGTTAACTATGCGCAACAGGCATGCGCCCTGCTCTGCACTGCC
CACTTATTAAGGAGTATAAA

Downstream 100 bases:

>100_bases
CCGGTAAAATTATAATTGCGACGAATGACAATGAAGGGTACCAAATGAAAACCGTAACTGTAAGAGATCTCGTGGTTGGC
GAAGGCGCGCCAAAGATCAT

Product: quinate/shikimate dehydrogenase

Products: NA

Alternate protein names: NAD-dependent shikimate 5-dehydrogenase 2

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDNTTFASAIEGLKALKMRGTGVSMPNKQLACEYVDE
LTPAAKLVGAINTIVNDDGYLRGYNTDGTGHIRAIKESGFDIRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDF
FEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECVYNPHMTK
LLQQAQQAGCKTIDGYGMLLWQGAEQFELWTGKAFPLDYVKQVMGFTA

Sequences:

>Translated_288_residues
MDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDNTTFASAIEGLKALKMRGTGVSMPNKQLACEYVDE
LTPAAKLVGAINTIVNDDGYLRGYNTDGTGHIRAIKESGFDIRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDF
FEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECVYNPHMTK
LLQQAQQAGCKTIDGYGMLLWQGAEQFELWTGKAFPLDYVKQVMGFTA
>Mature_288_residues
MDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDNTTFASAIEGLKALKMRGTGVSMPNKQLACEYVDE
LTPAAKLVGAINTIVNDDGYLRGYNTDGTGHIRAIKESGFDIRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDF
FEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECVYNPHMTK
LLQQAQQAGCKTIDGYGMLLWQGAEQFELWTGKAFPLDYVKQVMGFTA

Specific function: Aromatic amino acids biosynthesis; shikimate pathway; fourth step. [C]

COG id: COG0169

COG function: function code E; Shikimate 5-dehydrogenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the shikimate dehydrogenase family

Homologues:

Organism=Escherichia coli, GI1787983, Length=288, Percent_Identity=91.3194444444444, Blast_Score=551, Evalue=1e-158,
Organism=Escherichia coli, GI1789675, Length=272, Percent_Identity=27.5735294117647, Blast_Score=86, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6320332, Length=278, Percent_Identity=28.4172661870504, Blast_Score=83, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDIB_SALA4 (B5F7D6)

Other databases:

- EMBL:   CP001138
- RefSeq:   YP_002146678.1
- ProteinModelPortal:   B5F7D6
- SMR:   B5F7D6
- GeneID:   6795616
- GenomeReviews:   CP001138_GR
- KEGG:   sea:SeAg_B1813
- HOGENOM:   HBG553408
- OMA:   YLYLTIA
- ProtClustDB:   PRK12749
- GO:   GO:0005737
- GO:   GO:0005488
- HAMAP:   MF_01578
- InterPro:   IPR016040
- InterPro:   IPR022872
- InterPro:   IPR013708
- InterPro:   IPR022893
- InterPro:   IPR006151
- Gene3D:   G3DSA:3.40.50.720

Pfam domain/function: PF01488 Shikimate_DH; PF08501 Shikimate_dh_N

EC number: =1.1.1.282

Molecular weight: Translated: 31319; Mature: 31319

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: ACT_SITE 71-71 BINDING 107-107 BINDING 205-205 BINDING 235-235

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDNTTFASAIEGLKALK
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHH
MRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVNDDGYLRGYNTDGTGHIRAIKESGF
CCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCC
DIRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVT
CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEE
VTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECVYNPHMTK
EHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHH
LLQQAQQAGCKTIDGYGMLLWQGAEQFELWTGKAFPLDYVKQVMGFTA
HHHHHHHCCCCEECCCEEEEECCCCHHEEECCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDNTTFASAIEGLKALK
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHH
MRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVNDDGYLRGYNTDGTGHIRAIKESGF
CCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCC
DIRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVT
CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEE
VTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECVYNPHMTK
EHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHH
LLQQAQQAGCKTIDGYGMLLWQGAEQFELWTGKAFPLDYVKQVMGFTA
HHHHHHHCCCCEECCCEEEEECCCCHHEEECCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA