| Definition | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 chromosome, complete genome. |
|---|---|
| Accession | NC_011094 |
| Length | 4,709,075 |
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The map label for this gene is stfR [H]
Identifier: 194736619
GI number: 194736619
Start: 685933
End: 688611
Strand: Direct
Name: stfR [H]
Synonym: SeSA_A0710
Alternate gene names: 194736619
Gene position: 685933-688611 (Clockwise)
Preceding gene: 194738375
Following gene: 194734821
Centisome position: 14.57
GC content: 55.24
Gene sequence:
>2679_bases ATGCCAGTACTTATTTCCGGCGTACTGAAAGATGCCACGGGAACGCCGGTACAGAACTGCACCATTCAGCTGAAGGCCTG CCGGACCAGTACGACGGTGGTCGTGAATACGGTGGCATCGGAAAATCCGGATGACGCCGGGCGCTACAGCATGGATGTGG AGCAGGGGCAGTACACTGTCACGCTCCTGGTGGAAGGGTATCCCCCGTCACATGCCGGAGTTATTACGGTTTACGATGAT TCAAAGCCGGGCACCCTGAATGATTTTCTGGGGGCCATGACGGAAGACGACGTCCGCCCGGAGGCGCTGCGGCGTTTTGA GGCGATGGTGGAAGAAGTTGCCCGCCAGGCATCGGAGGCATCGCGGAATGCCACCTCCGCAGGGCAGGCATCTGAACAGG CGCAGACATCAGCAGGTCAGGCAGCGGAAAGCGCCACGGCAGCAGTGAATGCAGCCGGAGCGGCAGAAGCATCAGCCACA CAGGCAGCCTCATCCGCAGCATCTGCGGAGAGCAGCGCAGGTACGGCGACCACAAAAGCCGGGGAGGCATCAGCCAGCGC GGCGTCGGCTGACACAGCCAGAACGGCAGCAGCCGCATCGGCAGCCGCAGCGAAAACATCTGAAGCGAATGCAGATGCCT CCCGTACTGCCGCCGGCGATTCAGCTGCTGCCGCAGCCGCCAGCGCGACGGCGGCGCAGACATCAGCAGCGCGCGCCGGA GCATCCGAAACCGCCGCGAAGATGTCAGAAACGCAGGCGGCCTCCAGTGCCGGTGATGCAGGTGCGTCAGCCACTGCGGC GGCAGCGTCGGAAAAGGCGGCAGCCGCATCGGCAGCCGCAGCAAAAATATCTGAGACAAACGCAGCAACGTCAGCAAGTA CAGCAGCAGCCAGCGCAACAGCCGCCTCGTCATCAGCATCGGAGGCATCCAATCACGCCGCCGCATCTGATACCAGCGCA TCACTGGCGGCGCAAAGCAGTACTGCTGCCGGAGCAGCAGCCACCAGAGCAGAAGATGCCGCAAAACGGGCAGAAGACAT CGCGGACGTGATTTCCCTGGAAGATGCCAGCCTGACGAAAAAAGGTATCGTTAAGTTAAGCAGTGCCACGGACAGTGACA GCGAAGCGCTGGCAGCCACACCAAAGGCGGTAAAAACCGTTATGGGTGAGGTGCAGACCAAAGCGCCGCTGGACAGCCCG GCATTCACTGGAACGCCGACCACACCGACGCCGCCAGACGATGCTAAAGGGCTTCAGACAGCAAACGCGGAGTTTGTCCG CAAACTGATTGCCGCGCTGGTTGGTTCCGTACCGGAGTCACTGGACACCCTGCAGGAACTGGCGGACGCGCTGGGTAACG ATCCGAGCTTTGCCACCACTGTACTGAATAAACTGGCGGGCAAGCAGCCGCTGGACGATACACTGACGGCGCTGTCAGGA AAAAGCGTTGACGGTCTTATCGAATACGTTGGTTTACGGGAAACCATAAATCACGCCGCCGATGCATTACTAAAATCGCA GAACGGCGGAGATATTCAGGACAAAAAACAATTTGCGAGAACTATCGGCGCTGTGACTTCAACTACAATTTCACTTGGTG AATCAGGCTGGTTCAAAATCGCCACGGTTGTAATGCCGCAGGCTACATCAACAGCGGTGATTAAACTGTACGGTGGGGCG GGGTTTAACGCTGGTTCACCTGAACAGGCGGCAATCAGCGAACTGGTATTGCGTGCCAGTAATGGTTCACCTGTTGGAAT AACTGCCACGTTGTGGAGACGCTCGCCTGCTGCGGCTAACGAGGTCGCATGGGTTAATACATCAGGCGACACCTACGATA TTTATATTAATATCGGCCAGTATGCGTACTGGTTAATTGCGCAATATGATTACACCGGTAATGCAAATGTCACGCTGCAC AGTACACCTGAATATTCATCAGTCCAGCCGGGGGACTCAACCAGCGGTCAGACATATACACTGTTTAATAGCCTGATGAA ACCCACTCCCGAAGATGTCGGAGCGCTGTCAGTTAATGGAGGAAGGCTAAACGGCCCGTTAGGCATTGGTACTGACAATG CGCTTGGTGGTAATTCGATTGTGTTCGGCGATAACGACACAGGAATTAAACAGAACGGTGACGGGATACTGGATACGTTT GCGAATAGCCAGCACACCGTTCGTGTCGCTCCCGGTGAAATGCAGGTTCTGGGAGCCATTCGCGCAGGCAATGCCAAACG AATGACCATGACTAGCTCAAATAACTCCGTGCTGAATGCTCAATTTCATTTGTGGGGTGACGGAAATCGACCAACGGTTA TTGAGCTGGATGACGACCAGGGATGGCATTTATACAGCCAGCGTAATACCGATGGCAGTATTCAGTTTGTTGTTAATGGA CAAGTTATTCCGGATAATTACGGTAATTTCGACGCCCGTTATTTAACATCAGGAAACGTATATACAAAAGGCGAATCAGA TAATCGTTATGTCCAAAATATCCAGCGTGGCGCCCCAGTATGGCCGGGCAAAGTAGATGAATATGGACCTGCAGAAGCGC CTGCTGGTTGCTTTTTAACACAAGCCAGACATGACCCAACAACAGCATACGGTGTGACATTTGCGTATCGACCGTTGCAA ATGTGGGTGGGTAATGGCTGGCGTACAATTAATGGATGA
Upstream 100 bases:
>100_bases AGTGTTCTCTGCCGGCATATTTACGTGACCCGGATAATCAGTGCTGAGATGTGAATGAATCTGAAGCCTGCCTGCGGGCG GGCTTTTTTATGGAGGTAAT
Downstream 100 bases:
>100_bases TTAAGGAAACTATAATGGAATTAAAAAACGTAACCAGATACACTCCTGATGACCCGGATTATGATAACAACTTTCTGTAT TTTCGTAGTGAAGATGGTCA
Product: side tail fiber protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 892; Mature: 891
Protein sequence:
>892_residues MPVLISGVLKDATGTPVQNCTIQLKACRTSTTVVVNTVASENPDDAGRYSMDVEQGQYTVTLLVEGYPPSHAGVITVYDD SKPGTLNDFLGAMTEDDVRPEALRRFEAMVEEVARQASEASRNATSAGQASEQAQTSAGQAAESATAAVNAAGAAEASAT QAASSAASAESSAGTATTKAGEASASAASADTARTAAAASAAAAKTSEANADASRTAAGDSAAAAAASATAAQTSAARAG ASETAAKMSETQAASSAGDAGASATAAAASEKAAAASAAAAKISETNAATSASTAAASATAASSSASEASNHAAASDTSA SLAAQSSTAAGAAATRAEDAAKRAEDIADVISLEDASLTKKGIVKLSSATDSDSEALAATPKAVKTVMGEVQTKAPLDSP AFTGTPTTPTPPDDAKGLQTANAEFVRKLIAALVGSVPESLDTLQELADALGNDPSFATTVLNKLAGKQPLDDTLTALSG KSVDGLIEYVGLRETINHAADALLKSQNGGDIQDKKQFARTIGAVTSTTISLGESGWFKIATVVMPQATSTAVIKLYGGA GFNAGSPEQAAISELVLRASNGSPVGITATLWRRSPAAANEVAWVNTSGDTYDIYINIGQYAYWLIAQYDYTGNANVTLH STPEYSSVQPGDSTSGQTYTLFNSLMKPTPEDVGALSVNGGRLNGPLGIGTDNALGGNSIVFGDNDTGIKQNGDGILDTF ANSQHTVRVAPGEMQVLGAIRAGNAKRMTMTSSNNSVLNAQFHLWGDGNRPTVIELDDDQGWHLYSQRNTDGSIQFVVNG QVIPDNYGNFDARYLTSGNVYTKGESDNRYVQNIQRGAPVWPGKVDEYGPAEAPAGCFLTQARHDPTTAYGVTFAYRPLQ MWVGNGWRTING
Sequences:
>Translated_892_residues MPVLISGVLKDATGTPVQNCTIQLKACRTSTTVVVNTVASENPDDAGRYSMDVEQGQYTVTLLVEGYPPSHAGVITVYDD SKPGTLNDFLGAMTEDDVRPEALRRFEAMVEEVARQASEASRNATSAGQASEQAQTSAGQAAESATAAVNAAGAAEASAT QAASSAASAESSAGTATTKAGEASASAASADTARTAAAASAAAAKTSEANADASRTAAGDSAAAAAASATAAQTSAARAG ASETAAKMSETQAASSAGDAGASATAAAASEKAAAASAAAAKISETNAATSASTAAASATAASSSASEASNHAAASDTSA SLAAQSSTAAGAAATRAEDAAKRAEDIADVISLEDASLTKKGIVKLSSATDSDSEALAATPKAVKTVMGEVQTKAPLDSP AFTGTPTTPTPPDDAKGLQTANAEFVRKLIAALVGSVPESLDTLQELADALGNDPSFATTVLNKLAGKQPLDDTLTALSG KSVDGLIEYVGLRETINHAADALLKSQNGGDIQDKKQFARTIGAVTSTTISLGESGWFKIATVVMPQATSTAVIKLYGGA GFNAGSPEQAAISELVLRASNGSPVGITATLWRRSPAAANEVAWVNTSGDTYDIYINIGQYAYWLIAQYDYTGNANVTLH STPEYSSVQPGDSTSGQTYTLFNSLMKPTPEDVGALSVNGGRLNGPLGIGTDNALGGNSIVFGDNDTGIKQNGDGILDTF ANSQHTVRVAPGEMQVLGAIRAGNAKRMTMTSSNNSVLNAQFHLWGDGNRPTVIELDDDQGWHLYSQRNTDGSIQFVVNG QVIPDNYGNFDARYLTSGNVYTKGESDNRYVQNIQRGAPVWPGKVDEYGPAEAPAGCFLTQARHDPTTAYGVTFAYRPLQ MWVGNGWRTING >Mature_891_residues PVLISGVLKDATGTPVQNCTIQLKACRTSTTVVVNTVASENPDDAGRYSMDVEQGQYTVTLLVEGYPPSHAGVITVYDDS KPGTLNDFLGAMTEDDVRPEALRRFEAMVEEVARQASEASRNATSAGQASEQAQTSAGQAAESATAAVNAAGAAEASATQ AASSAASAESSAGTATTKAGEASASAASADTARTAAAASAAAAKTSEANADASRTAAGDSAAAAAASATAAQTSAARAGA SETAAKMSETQAASSAGDAGASATAAAASEKAAAASAAAAKISETNAATSASTAAASATAASSSASEASNHAAASDTSAS LAAQSSTAAGAAATRAEDAAKRAEDIADVISLEDASLTKKGIVKLSSATDSDSEALAATPKAVKTVMGEVQTKAPLDSPA FTGTPTTPTPPDDAKGLQTANAEFVRKLIAALVGSVPESLDTLQELADALGNDPSFATTVLNKLAGKQPLDDTLTALSGK SVDGLIEYVGLRETINHAADALLKSQNGGDIQDKKQFARTIGAVTSTTISLGESGWFKIATVVMPQATSTAVIKLYGGAG FNAGSPEQAAISELVLRASNGSPVGITATLWRRSPAAANEVAWVNTSGDTYDIYINIGQYAYWLIAQYDYTGNANVTLHS TPEYSSVQPGDSTSGQTYTLFNSLMKPTPEDVGALSVNGGRLNGPLGIGTDNALGGNSIVFGDNDTGIKQNGDGILDTFA NSQHTVRVAPGEMQVLGAIRAGNAKRMTMTSSNNSVLNAQFHLWGDGNRPTVIELDDDQGWHLYSQRNTDGSIQFVVNGQ VIPDNYGNFDARYLTSGNVYTKGESDNRYVQNIQRGAPVWPGKVDEYGPAEAPAGCFLTQARHDPTTAYGVTFAYRPLQM WVGNGWRTING
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tail fiber family [H]
Homologues:
Organism=Escherichia coli, GI87081892, Length=138, Percent_Identity=76.8115942028985, Blast_Score=221, Evalue=1e-58,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008969 - InterPro: IPR014766 - InterPro: IPR011083 - InterPro: IPR005003 - InterPro: IPR013609 [H]
Pfam domain/function: PF07484 Collar; PF03335 Phage_fiber; PF08400 phage_tail_N [H]
EC number: NA
Molecular weight: Translated: 90810; Mature: 90678
Theoretical pI: Translated: 4.43; Mature: 4.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVLISGVLKDATGTPVQNCTIQLKACRTSTTVVVNTVASENPDDAGRYSMDVEQGQYTV CCEEEEEHHHCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEECCCCEEE TLLVEGYPPSHAGVITVYDDSKPGTLNDFLGAMTEDDVRPEALRRFEAMVEEVARQASEA EEEEECCCCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH SRNATSAGQASEQAQTSAGQAAESATAAVNAAGAAEASATQAASSAASAESSAGTATTKA HCCCCCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC GEASASAASADTARTAAAASAAAAKTSEANADASRTAAGDSAAAAAASATAAQTSAARAG CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCC ASETAAKMSETQAASSAGDAGASATAAAASEKAAAASAAAAKISETNAATSASTAAASAT CHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH AASSSASEASNHAAASDTSASLAAQSSTAAGAAATRAEDAAKRAEDIADVISLEDASLTK HCCCCHHHHHCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH KGIVKLSSATDSDSEALAATPKAVKTVMGEVQTKAPLDSPAFTGTPTTPTPPDDAKGLQT HHCEEEECCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC ANAEFVRKLIAALVGSVPESLDTLQELADALGNDPSFATTVLNKLAGKQPLDDTLTALSG CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHCC KSVDGLIEYVGLRETINHAADALLKSQNGGDIQDKKQFARTIGAVTSTTISLGESGWFKI CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCEEE ATVVMPQATSTAVIKLYGGAGFNAGSPEQAAISELVLRASNGSPVGITATLWRRSPAAAN EEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC EVAWVNTSGDTYDIYINIGQYAYWLIAQYDYTGNANVTLHSTPEYSSVQPGDSTSGQTYT CEEEEECCCCEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCHH LFNSLMKPTPEDVGALSVNGGRLNGPLGIGTDNALGGNSIVFGDNDTGIKQNGDGILDTF HHHHHHCCCCCCCCEEEECCCEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHH ANSQHTVRVAPGEMQVLGAIRAGNAKRMTMTSSNNSVLNAQFHLWGDGNRPTVIELDDDQ CCCCCEEEECCCCEEEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCEEEEECCCC GWHLYSQRNTDGSIQFVVNGQVIPDNYGNFDARYLTSGNVYTKGESDNRYVQNIQRGAPV CEEEEECCCCCCEEEEEEECEECCCCCCCCCEEEEECCCEEECCCCCCHHHHHHHHCCCC WPGKVDEYGPAEAPAGCFLTQARHDPTTAYGVTFAYRPLQMWVGNGWRTING CCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEEHHHHHHCCCEEECCC >Mature Secondary Structure PVLISGVLKDATGTPVQNCTIQLKACRTSTTVVVNTVASENPDDAGRYSMDVEQGQYTV CEEEEEHHHCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEECCCCEEE TLLVEGYPPSHAGVITVYDDSKPGTLNDFLGAMTEDDVRPEALRRFEAMVEEVARQASEA EEEEECCCCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH SRNATSAGQASEQAQTSAGQAAESATAAVNAAGAAEASATQAASSAASAESSAGTATTKA HCCCCCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC GEASASAASADTARTAAAASAAAAKTSEANADASRTAAGDSAAAAAASATAAQTSAARAG CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCC ASETAAKMSETQAASSAGDAGASATAAAASEKAAAASAAAAKISETNAATSASTAAASAT CHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH AASSSASEASNHAAASDTSASLAAQSSTAAGAAATRAEDAAKRAEDIADVISLEDASLTK HCCCCHHHHHCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH KGIVKLSSATDSDSEALAATPKAVKTVMGEVQTKAPLDSPAFTGTPTTPTPPDDAKGLQT HHCEEEECCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC ANAEFVRKLIAALVGSVPESLDTLQELADALGNDPSFATTVLNKLAGKQPLDDTLTALSG CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHCC KSVDGLIEYVGLRETINHAADALLKSQNGGDIQDKKQFARTIGAVTSTTISLGESGWFKI CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCEEE ATVVMPQATSTAVIKLYGGAGFNAGSPEQAAISELVLRASNGSPVGITATLWRRSPAAAN EEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC EVAWVNTSGDTYDIYINIGQYAYWLIAQYDYTGNANVTLHSTPEYSSVQPGDSTSGQTYT CEEEEECCCCEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCHH LFNSLMKPTPEDVGALSVNGGRLNGPLGIGTDNALGGNSIVFGDNDTGIKQNGDGILDTF HHHHHHCCCCCCCCEEEECCCEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHH ANSQHTVRVAPGEMQVLGAIRAGNAKRMTMTSSNNSVLNAQFHLWGDGNRPTVIELDDDQ CCCCCEEEECCCCEEEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCEEEEECCCC GWHLYSQRNTDGSIQFVVNGQVIPDNYGNFDARYLTSGNVYTKGESDNRYVQNIQRGAPV CEEEEECCCCCCEEEEEEECEECCCCCCCCCEEEEECCCEEECCCCCCHHHHHHHHCCCC WPGKVDEYGPAEAPAGCFLTQARHDPTTAYGVTFAYRPLQMWVGNGWRTING CCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEEHHHHHHCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]