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The map label for this gene is ydeR [H]

Identifier: 194736528

GI number: 194736528

Start: 1240588

End: 1241109

Strand: Reverse

Name: ydeR [H]

Synonym: SeSA_A1269

Alternate gene names: 194736528

Gene position: 1241109-1240588 (Counterclockwise)

Preceding gene: 194737274

Following gene: 194735778

Centisome position: 26.36

GC content: 51.34

Gene sequence:

>522_bases
ATGATTGTTACAAACAGGAAAAAGACAGTGGCATTCATCATTGCGCTTGGTTGGTTATTTTCCTCATCCAGTCAGGCTGT
CAATATTGATATCAGCGGTACCGTTATCGCCTCACCTTGTGTGGTTAACGGCGGCGATGAGTCTCTCGCTATTAATCTGG
GGACCGGGATTCAGGCCAATACTCTAGAAACAAGTGGCAGCACTACCCCATGGGTTGAAAAGACATTGACGCTCACCGAT
TGCCCAGCCTCCACCACCTCATTTAGCGTAGCCTTTGCTGGCACCGCCGACACGGATACAGACTTCTACAAAAATACCGG
CACTGCCACCAACCTGAAGCTTGAGTTAACGGATGACAAAAGCGAGCACGCCTATAAAAATGGCGCTGCTCTGAAGGACA
TCGCAATCCCATCCGACACGCATGCCTATGACCTGAAACTGCGCTCCCGTGCAGTGGCAACAGGCCTCGTGATGCCAGGC
ACCATCGAGGGCCAAGTACAGGCAACCTTCACCTACCAGTAA

Upstream 100 bases:

>100_bases
TAAAGTGTCTTATTTTATAGATGATGCTGAAAGCGTAACTGCGGGTAATGTCAAAACAGCCATTGAGCTTAAAGTTACTT
ACAACTAATAGGGATTATAT

Downstream 100 bases:

>100_bases
TCCAGGACGGGACAATGGCGCAACAGATAAATAAACTGCTCCCCGCGTTGGCCTGTCTATGGGCGGTAAGCAGTATTTAT
TCCGTGCAGGCAACCGATAT

Product: S-fimbrial adhesin protein SfaS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MIVTNRKKTVAFIIALGWLFSSSSQAVNIDISGTVIASPCVVNGGDESLAINLGTGIQANTLETSGSTTPWVEKTLTLTD
CPASTTSFSVAFAGTADTDTDFYKNTGTATNLKLELTDDKSEHAYKNGAALKDIAIPSDTHAYDLKLRSRAVATGLVMPG
TIEGQVQATFTYQ

Sequences:

>Translated_173_residues
MIVTNRKKTVAFIIALGWLFSSSSQAVNIDISGTVIASPCVVNGGDESLAINLGTGIQANTLETSGSTTPWVEKTLTLTD
CPASTTSFSVAFAGTADTDTDFYKNTGTATNLKLELTDDKSEHAYKNGAALKDIAIPSDTHAYDLKLRSRAVATGLVMPG
TIEGQVQATFTYQ
>Mature_173_residues
MIVTNRKKTVAFIIALGWLFSSSSQAVNIDISGTVIASPCVVNGGDESLAINLGTGIQANTLETSGSTTPWVEKTLTLTD
CPASTTSFSVAFAGTADTDTDFYKNTGTATNLKLELTDDKSEHAYKNGAALKDIAIPSDTHAYDLKLRSRAVATGLVMPG
TIEGQVQATFTYQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1787780, Length=158, Percent_Identity=35.4430379746835, Blast_Score=88, Evalue=3e-19,
Organism=Escherichia coli, GI1790774, Length=147, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18217; Mature: 18217

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVTNRKKTVAFIIALGWLFSSSSQAVNIDISGTVIASPCVVNGGDESLAINLGTGIQAN
CEECCCCCEEEEEEEEEHHHCCCCCEEEEEECCEEEECCEEEECCCCEEEEEECCCCEEE
TLETSGSTTPWVEKTLTLTDCPASTTSFSVAFAGTADTDTDFYKNTGTATNLKLELTDDK
EEECCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCC
SEHAYKNGAALKDIAIPSDTHAYDLKLRSRAVATGLVMPGTIEGQVQATFTYQ
CCHHHCCCCCEEEEECCCCCCEEEEEECCCEEEECEECCCCCCCEEEEEEEEC
>Mature Secondary Structure
MIVTNRKKTVAFIIALGWLFSSSSQAVNIDISGTVIASPCVVNGGDESLAINLGTGIQAN
CEECCCCCEEEEEEEEEHHHCCCCCEEEEEECCEEEECCEEEECCCCEEEEEECCCCEEE
TLETSGSTTPWVEKTLTLTDCPASTTSFSVAFAGTADTDTDFYKNTGTATNLKLELTDDK
EEECCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCC
SEHAYKNGAALKDIAIPSDTHAYDLKLRSRAVATGLVMPGTIEGQVQATFTYQ
CCHHHCCCCCEEEEECCCCCCEEEEEECCCEEEECEECCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]