| Definition | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 chromosome, complete genome. |
|---|---|
| Accession | NC_011094 |
| Length | 4,709,075 |
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The map label for this gene is ecoRIIR [H]
Identifier: 194735875
GI number: 194735875
Start: 4614868
End: 4616076
Strand: Reverse
Name: ecoRIIR [H]
Synonym: SeSA_A4748
Alternate gene names: 194735875
Gene position: 4616076-4614868 (Counterclockwise)
Preceding gene: 194735234
Following gene: 194735349
Centisome position: 98.03
GC content: 45.08
Gene sequence:
>1209_bases ATGTCGGGGCTACATTCATGGCTTTTAGATAAGTCAACCAGTGACACCTATATGTTCATCAAGCGCCTGTCAGCCAACGA TACCGGTGCGACGGGCGGGCATCAGGTTGGCATTTACATACCTTCTGGCATTGTTGAGCATCTTTTCCCTTCAATTAATC ATACAAGGGATCTTAACCCGTCCGTGACGCTGAATGCACATACCTCCTCGCACAGTTGCCCGGACAGTGAGGCCAGAGCC GTTTATTACAATGGACGTTTTTTTGGTAAGACCCGAAATGAAAAGCGTATCACCCGATGGGGAGGAGGAAAGAATCCTCT GCAAATATCTGAAAACACGGGGGCACTGGCCTTATTGGCGTTTGATCATCGTCAGGGAGCAGATAGTCAATGCGTTGATA TCTGGGTGTGTCATGACGCTGAAGAAGAAGATATTGTTGAGTCATCGCTCGGAGAAATTGTTCCCGGATCGTTAGTCTAT GGTCCCGCAAATGAGATTCTGGGCGGTCTGGCTTTAAAAGAACCGGTTTCCAGTGGGTATTGTCTTCCGGAAGAGTGGAG AACAAATTTCCCTTCGGGTAAAGAGATTATCCAGTATGCAGCAGCTCACTATTCCCCCAATGTCGTAGGCCCGGATAAGC AACTCATTGAACGTCGTCGTGTTGAATACGAAATTTTTCTGCTGGTGGAGGAAATGCATGTGCTGGGTATAGTTCAGTCT GGGTTTGGTTCCGTAAATGAATTTATTGCACTGGCGAATTCCGTGAGCAACAGACGAAAATCACGAGCCGGAAAATCACT GGAGCTGCATCTTGAACAGCTTTTTAATGAGTATGGACTGAAAACTTTTGAGACTCAGGCCGTTACGGAAGGAAATAAGA AACCAGATTTTTTATTCCCCTCTGCGCAAGCTTATCACGATGAAGCTTTTCCAGAGCAGAAACTGCGTATGTTAGCGGTA AAAACGACCTGTAAAGATCGCTGGCGGCAGATATTAAATGAGGCAGACAGGATTCAGGATATTTATCTCTTTACCCTTCA GGAAGGTGTTTCTGTTGCTCAATTTCAAGAGATGCAGCAGGAAAGGGTCAGGTTAGTTGTGCCCAGTAGCCTTCATGATA AGTACCCAAAAGCTATCCGGGAATATCTTATTTCGTTAGAAACATTTATTGATGAAACTAAATCATTGTATGCCGATGAA ATAATTTGA
Upstream 100 bases:
>100_bases CGACATCATATAAAACGACATCGTGAGTATTCACAAAAGCAGAGCTGTGGCAGGATAACCCTCTATAAATCAGAGATATT TTTACAGCGAGGAAGTGATG
Downstream 100 bases:
>100_bases TTCTGTTTCCCCCCGGATAAATTCCGGGGGGATCTGTTTATATTATTTTTTGGTCACCTTACTAGCAGCGGCTTTCATAA TATAAGGCTGAAGCAGTTTT
Product: type II restriction enzyme EcoRII
Products: NA
Alternate protein names: R.EcoRII; Endonuclease EcoRII; Type II restriction enzyme EcoRII [H]
Number of amino acids: Translated: 402; Mature: 401
Protein sequence:
>402_residues MSGLHSWLLDKSTSDTYMFIKRLSANDTGATGGHQVGIYIPSGIVEHLFPSINHTRDLNPSVTLNAHTSSHSCPDSEARA VYYNGRFFGKTRNEKRITRWGGGKNPLQISENTGALALLAFDHRQGADSQCVDIWVCHDAEEEDIVESSLGEIVPGSLVY GPANEILGGLALKEPVSSGYCLPEEWRTNFPSGKEIIQYAAAHYSPNVVGPDKQLIERRRVEYEIFLLVEEMHVLGIVQS GFGSVNEFIALANSVSNRRKSRAGKSLELHLEQLFNEYGLKTFETQAVTEGNKKPDFLFPSAQAYHDEAFPEQKLRMLAV KTTCKDRWRQILNEADRIQDIYLFTLQEGVSVAQFQEMQQERVRLVVPSSLHDKYPKAIREYLISLETFIDETKSLYADE II
Sequences:
>Translated_402_residues MSGLHSWLLDKSTSDTYMFIKRLSANDTGATGGHQVGIYIPSGIVEHLFPSINHTRDLNPSVTLNAHTSSHSCPDSEARA VYYNGRFFGKTRNEKRITRWGGGKNPLQISENTGALALLAFDHRQGADSQCVDIWVCHDAEEEDIVESSLGEIVPGSLVY GPANEILGGLALKEPVSSGYCLPEEWRTNFPSGKEIIQYAAAHYSPNVVGPDKQLIERRRVEYEIFLLVEEMHVLGIVQS GFGSVNEFIALANSVSNRRKSRAGKSLELHLEQLFNEYGLKTFETQAVTEGNKKPDFLFPSAQAYHDEAFPEQKLRMLAV KTTCKDRWRQILNEADRIQDIYLFTLQEGVSVAQFQEMQQERVRLVVPSSLHDKYPKAIREYLISLETFIDETKSLYADE II >Mature_401_residues SGLHSWLLDKSTSDTYMFIKRLSANDTGATGGHQVGIYIPSGIVEHLFPSINHTRDLNPSVTLNAHTSSHSCPDSEARAV YYNGRFFGKTRNEKRITRWGGGKNPLQISENTGALALLAFDHRQGADSQCVDIWVCHDAEEEDIVESSLGEIVPGSLVYG PANEILGGLALKEPVSSGYCLPEEWRTNFPSGKEIIQYAAAHYSPNVVGPDKQLIERRRVEYEIFLLVEEMHVLGIVQSG FGSVNEFIALANSVSNRRKSRAGKSLELHLEQLFNEYGLKTFETQAVTEGNKKPDFLFPSAQAYHDEAFPEQKLRMLAVK TTCKDRWRQILNEADRIQDIYLFTLQEGVSVAQFQEMQQERVRLVVPSSLHDKYPKAIREYLISLETFIDETKSLYADEI I
Specific function: Recognizes the double-stranded sequence CCWGG and cleaves before C-1 [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011335 - InterPro: IPR015109 - InterPro: IPR015300 [H]
Pfam domain/function: PF09019 EcoRII-C; PF09217 EcoRII-N [H]
EC number: =3.1.21.4 [H]
Molecular weight: Translated: 45246; Mature: 45115
Theoretical pI: Translated: 5.60; Mature: 5.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGLHSWLLDKSTSDTYMFIKRLSANDTGATGGHQVGIYIPSGIVEHLFPSINHTRDLNP CCCHHHHHHCCCCCCCEEHHHHHCCCCCCCCCCCEEEEEECHHHHHHHCCCCCCCCCCCC SVTLNAHTSSHSCPDSEARAVYYNGRFFGKTRNEKRITRWGGGKNPLQISENTGALALLA CEEEEECCCCCCCCCCCCCEEEECCEEECCCCCCCCEEECCCCCCCEEEECCCCEEEEEE FDHRQGADSQCVDIWVCHDAEEEDIVESSLGEIVPGSLVYGPANEILGGLALKEPVSSGY EECCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHCCCCCCC CLPEEWRTNFPSGKEIIQYAAAHYSPNVVGPDKQLIERRRVEYEIFLLVEEMHVLGIVQS CCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEEEEEEHHHHHHHHHHH GFGSVNEFIALANSVSNRRKSRAGKSLELHLEQLFNEYGLKTFETQAVTEGNKKPDFLFP CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEHHHHHCCCCCCCEECC SAQAYHDEAFPEQKLRMLAVKTTCKDRWRQILNEADRIQDIYLFTLQEGVSVAQFQEMQQ CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHCCCCHHHHHHHHH ERVRLVVPSSLHDKYPKAIREYLISLETFIDETKSLYADEII HHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SGLHSWLLDKSTSDTYMFIKRLSANDTGATGGHQVGIYIPSGIVEHLFPSINHTRDLNP CCHHHHHHCCCCCCCEEHHHHHCCCCCCCCCCCEEEEEECHHHHHHHCCCCCCCCCCCC SVTLNAHTSSHSCPDSEARAVYYNGRFFGKTRNEKRITRWGGGKNPLQISENTGALALLA CEEEEECCCCCCCCCCCCCEEEECCEEECCCCCCCCEEECCCCCCCEEEECCCCEEEEEE FDHRQGADSQCVDIWVCHDAEEEDIVESSLGEIVPGSLVYGPANEILGGLALKEPVSSGY EECCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHCCCCCCC CLPEEWRTNFPSGKEIIQYAAAHYSPNVVGPDKQLIERRRVEYEIFLLVEEMHVLGIVQS CCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEEEEEEHHHHHHHHHHH GFGSVNEFIALANSVSNRRKSRAGKSLELHLEQLFNEYGLKTFETQAVTEGNKKPDFLFP CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEHHHHHCCCCCCCEECC SAQAYHDEAFPEQKLRMLAVKTTCKDRWRQILNEADRIQDIYLFTLQEGVSVAQFQEMQQ CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHCCCCHHHHHHHHH ERVRLVVPSSLHDKYPKAIREYLISLETFIDETKSLYADEII HHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2104830; 2597679; 2612358; 8392701 [H]