| Definition | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 chromosome, complete genome. |
|---|---|
| Accession | NC_011094 |
| Length | 4,709,075 |
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The map label for this gene is ybiO [H]
Identifier: 194735673
GI number: 194735673
Start: 947712
End: 949934
Strand: Reverse
Name: ybiO [H]
Synonym: SeSA_A0975
Alternate gene names: 194735673
Gene position: 949934-947712 (Counterclockwise)
Preceding gene: 194737230
Following gene: 194735035
Centisome position: 20.17
GC content: 54.3
Gene sequence:
>2223_bases ATGCGGTGGACCCTGTTCATCCTTTTTTGTCTACTGGGCGCGCCTGCCCATGCGGTCGCCATACCCGGCGTGACCACGGG GACATCAACCAGCCAGCAAGCAGCGCCAGAGCCCAGTCCTGAACAAAAAAAAGCGGCCTATGCGGTCCTGGCTGACGTAC TGGAGAACGAGGCTTCACGTAACGAATTAATAGCGCAACTCCGCGAAGCCTCAACCACGCCGCCGACCGAGCCGGCGCCA GCGCTTGCGCCGCCTGCGGCCAAAGATGAGAAAACGGTACTGGAGAACGTCACCACCGTTACCCGTCAGTACGGCGATGC TTTCGCTACCCGTTTCGCCCAGCTTTATCGCAACATCACCGATGCGCCGCACAAGCCGTTTAACTCGCAAACCTTCACCA ACGCGTTAACCCACTTTTTATTTCTGGCCGTCGCGGTATTTGGTTTTTATAGCGTGATACGGCTTTGCGCCCTGCCGTTA TATCGAAAAATGGGCCTGTGGGCACGCAAGAAAAACCGTGAACGCAGCAACTGGTTACAGCTCCCGGCGATGATCGTCGG CGCGTTTATTATCGACCTCCTGCTACTGGCGCTCACCTTATTTATCGGTCAGATGCTCAGTGATAATTTCCATGCGGGAA GTCGAACTATCGCTTTTCAGCAAAGCCTGTTCCTGAATGCCTTCGCGCTAATAGAGTTCTTTAAAGCGATTCTGCGGCTT ATTTTTTGCCCTAATGTACCGGAATTACGCCCATTCGCGATTCAGGATGCGACAGCGCGTTACTGGAATCGCCGTATGAG TTCGCTTAGCAGTTTGATTGGCTACGGGCTGATTGTTGCCGTTCCGATTATTTCCAATCAGGTGAATGTTCAGGTTGGCG CGATGGCTAATGTGGCGATCATGCTCTGCATCACCATCTGGGCGCTGTACCTGATCTTTAAAAACAAAGCGGAGATTACG CAACATTTATTAAGCCTGGCGGAACGATCATTAGCCTTTTTTAGCCTGTTTATCCGCGCCTTTGCGCTGGTGTGGCACTG GCTGGCCAGCGCTTACTTTATCGTGCTGTTTTTCTTCTCGTTATTCGACCCAGGCAATAGCCTGAAGTTTATGATGGGCG CGACCGTGCGCAGTCTGGCGATTATTGGCATCGCCGCGTTTATCTCCGGCATGTTTACCCGCTGGATAGCGAAAACCATC ACCCTGTCGCCCCATACGCAGCGCAATTACCCGGAATTACAAAAGCGGCTTAACGGCTGGCTCTCCTCGGCGCTAAAAGT CGCACGCTTTTTGACCGTCTGCGTCGCCGTTATGCTGTTGCTCAACGCCTGGGGGTTATTCGATTTCTGGCACTGGCTAC ATTATGGCGCGGGGGAAAAGATGGTCGATATCCTCATCCGTATCGCGTTAATCTTATTCTTCTCCGCCGTGGGATGGACG ATTCTCGCCAGTCTGATTGAGAATCGCCTGGCCTCCGATATTCATGGTCGCCCGCTACCCAGCGCCCGCACGCGCACGCT GCTGACGCTGTTCCGCAATGCGCTGGCAGTGATTATCAGTACCATAACCATCATGATCGTGTTATCGGAAATCGGCGTCA ATATCGCGCCATTGCTGGCTGGCGCGGGGGCGTTAGGTCTGGCTATCTCTTTCGGTTCGCAAACCCTGGTGAAAGATATT ATTACCGGCGTCTTTATTCAGTTTGAAAACGGGATGAATACCGGCGACTTAGTCACCATAGGCCCGCTGACGGGGACGGT CGAAAGAATGTCGATTCGTTCCGTCGGCGTGCGGCAGGATACCGGGGCATACCATATTATCCCGTGGTCCTCGATCACCA CTTTCGCCAACTTTGTGCGCGGTATCGGCTCTGTTGTCGCCAACTATGACGTGGATCGCCATGAGGATGCGGATAAAGCG AATCAGGCGCTGAAAGACGCGGTAACGGCGCTGATGGAGACGGAGGATATTCGCGGGCTGATTATCGGCGAACCCACGTT CGCCGGTATTGTCGGTTTAACAAACACGGCGTTTACTTTACGCGTATCGTTCACCACCCTACCGCTCAAGCAGTGGACGG TGCGTTTTGCCCTTGATAGCCAGGTGAAAAAGCATTTTGATCTGGCTAATGTGCGCGCGCCGGTGCAAACGTATCAGGTT CTGCCCGCCCCCACCGGCGGCCCGTCGTCTGATTCGCTGCCGCCGCGCGAACCGACGATTTAG
Upstream 100 bases:
>100_bases CTGCGGCAGGGAGGGCATCATGGAATAGTCCCATTTCATTTTCCCTCCCCTGCGCCATCTATACTTAGTGTTTTGCGTCT CTTTTCTCACTGGAGGAGTC
Downstream 100 bases:
>100_bases CGTTTGCGGGTGATAAAACGGCGACGCTGGTCGTCATCCATAAAGGTCCAGGCAATAAAGCGGCTTTGCTTTTGCCCCTG GGCCATCTCTTTTTTCACCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 740; Mature: 740
Protein sequence:
>740_residues MRWTLFILFCLLGAPAHAVAIPGVTTGTSTSQQAAPEPSPEQKKAAYAVLADVLENEASRNELIAQLREASTTPPTEPAP ALAPPAAKDEKTVLENVTTVTRQYGDAFATRFAQLYRNITDAPHKPFNSQTFTNALTHFLFLAVAVFGFYSVIRLCALPL YRKMGLWARKKNRERSNWLQLPAMIVGAFIIDLLLLALTLFIGQMLSDNFHAGSRTIAFQQSLFLNAFALIEFFKAILRL IFCPNVPELRPFAIQDATARYWNRRMSSLSSLIGYGLIVAVPIISNQVNVQVGAMANVAIMLCITIWALYLIFKNKAEIT QHLLSLAERSLAFFSLFIRAFALVWHWLASAYFIVLFFFSLFDPGNSLKFMMGATVRSLAIIGIAAFISGMFTRWIAKTI TLSPHTQRNYPELQKRLNGWLSSALKVARFLTVCVAVMLLLNAWGLFDFWHWLHYGAGEKMVDILIRIALILFFSAVGWT ILASLIENRLASDIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDI ITGVFIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGIGSVVANYDVDRHEDADKA NQALKDAVTALMETEDIRGLIIGEPTFAGIVGLTNTAFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLANVRAPVQTYQV LPAPTGGPSSDSLPPREPTI
Sequences:
>Translated_740_residues MRWTLFILFCLLGAPAHAVAIPGVTTGTSTSQQAAPEPSPEQKKAAYAVLADVLENEASRNELIAQLREASTTPPTEPAP ALAPPAAKDEKTVLENVTTVTRQYGDAFATRFAQLYRNITDAPHKPFNSQTFTNALTHFLFLAVAVFGFYSVIRLCALPL YRKMGLWARKKNRERSNWLQLPAMIVGAFIIDLLLLALTLFIGQMLSDNFHAGSRTIAFQQSLFLNAFALIEFFKAILRL IFCPNVPELRPFAIQDATARYWNRRMSSLSSLIGYGLIVAVPIISNQVNVQVGAMANVAIMLCITIWALYLIFKNKAEIT QHLLSLAERSLAFFSLFIRAFALVWHWLASAYFIVLFFFSLFDPGNSLKFMMGATVRSLAIIGIAAFISGMFTRWIAKTI TLSPHTQRNYPELQKRLNGWLSSALKVARFLTVCVAVMLLLNAWGLFDFWHWLHYGAGEKMVDILIRIALILFFSAVGWT ILASLIENRLASDIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDI ITGVFIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGIGSVVANYDVDRHEDADKA NQALKDAVTALMETEDIRGLIIGEPTFAGIVGLTNTAFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLANVRAPVQTYQV LPAPTGGPSSDSLPPREPTI >Mature_740_residues MRWTLFILFCLLGAPAHAVAIPGVTTGTSTSQQAAPEPSPEQKKAAYAVLADVLENEASRNELIAQLREASTTPPTEPAP ALAPPAAKDEKTVLENVTTVTRQYGDAFATRFAQLYRNITDAPHKPFNSQTFTNALTHFLFLAVAVFGFYSVIRLCALPL YRKMGLWARKKNRERSNWLQLPAMIVGAFIIDLLLLALTLFIGQMLSDNFHAGSRTIAFQQSLFLNAFALIEFFKAILRL IFCPNVPELRPFAIQDATARYWNRRMSSLSSLIGYGLIVAVPIISNQVNVQVGAMANVAIMLCITIWALYLIFKNKAEIT QHLLSLAERSLAFFSLFIRAFALVWHWLASAYFIVLFFFSLFDPGNSLKFMMGATVRSLAIIGIAAFISGMFTRWIAKTI TLSPHTQRNYPELQKRLNGWLSSALKVARFLTVCVAVMLLLNAWGLFDFWHWLHYGAGEKMVDILIRIALILFFSAVGWT ILASLIENRLASDIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDI ITGVFIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGIGSVVANYDVDRHEDADKA NQALKDAVTALMETEDIRGLIIGEPTFAGIVGLTNTAFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLANVRAPVQTYQV LPAPTGGPSSDSLPPREPTI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mscS (TC 1.A.23) family [H]
Homologues:
Organism=Escherichia coli, GI87081787, Length=742, Percent_Identity=85.7142857142857, Blast_Score=1252, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010920 - InterPro: IPR011066 - InterPro: IPR006685 - InterPro: IPR011014 [H]
Pfam domain/function: PF00924 MS_channel [H]
EC number: NA
Molecular weight: Translated: 81604; Mature: 81604
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: PS01246 UPF0003
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRWTLFILFCLLGAPAHAVAIPGVTTGTSTSQQAAPEPSPEQKKAAYAVLADVLENEASR CHHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH NELIAQLREASTTPPTEPAPALAPPAAKDEKTVLENVTTVTRQYGDAFATRFAQLYRNIT HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DAPHKPFNSQTFTNALTHFLFLAVAVFGFYSVIRLCALPLYRKMGLWARKKNRERSNWLQ CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH LPAMIVGAFIIDLLLLALTLFIGQMLSDNFHAGSRTIAFQQSLFLNAFALIEFFKAILRL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH IFCPNVPELRPFAIQDATARYWNRRMSSLSSLIGYGLIVAVPIISNQVNVQVGAMANVAI HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHH MLCITIWALYLIFKNKAEITQHLLSLAERSLAFFSLFIRAFALVWHWLASAYFIVLFFFS HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFDPGNSLKFMMGATVRSLAIIGIAAFISGMFTRWIAKTITLSPHTQRNYPELQKRLNGW HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH LSSALKVARFLTVCVAVMLLLNAWGLFDFWHWLHYGAGEKMVDILIRIALILFFSAVGWT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH ILASLIENRLASDIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLA HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH GAGALGLAISFGSQTLVKDIITGVFIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQD CCCHHHHHEECCCHHHHHHHHHHHEEEECCCCCCCCEEEECCCCCHHHHHHHHHCCCCCC TGAYHIIPWSSITTFANFVRGIGSVVANYDVDRHEDADKANQALKDAVTALMETEDIRGL CCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE IIGEPTFAGIVGLTNTAFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLANVRAPVQTYQV EECCCHHHHHHCCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEE LPAPTGGPSSDSLPPREPTI ECCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRWTLFILFCLLGAPAHAVAIPGVTTGTSTSQQAAPEPSPEQKKAAYAVLADVLENEASR CHHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH NELIAQLREASTTPPTEPAPALAPPAAKDEKTVLENVTTVTRQYGDAFATRFAQLYRNIT HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DAPHKPFNSQTFTNALTHFLFLAVAVFGFYSVIRLCALPLYRKMGLWARKKNRERSNWLQ CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH LPAMIVGAFIIDLLLLALTLFIGQMLSDNFHAGSRTIAFQQSLFLNAFALIEFFKAILRL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH IFCPNVPELRPFAIQDATARYWNRRMSSLSSLIGYGLIVAVPIISNQVNVQVGAMANVAI HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHH MLCITIWALYLIFKNKAEITQHLLSLAERSLAFFSLFIRAFALVWHWLASAYFIVLFFFS HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFDPGNSLKFMMGATVRSLAIIGIAAFISGMFTRWIAKTITLSPHTQRNYPELQKRLNGW HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH LSSALKVARFLTVCVAVMLLLNAWGLFDFWHWLHYGAGEKMVDILIRIALILFFSAVGWT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH ILASLIENRLASDIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLA HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH GAGALGLAISFGSQTLVKDIITGVFIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQD CCCHHHHHEECCCHHHHHHHHHHHEEEECCCCCCCCEEEECCCCCHHHHHHHHHCCCCCC TGAYHIIPWSSITTFANFVRGIGSVVANYDVDRHEDADKANQALKDAVTALMETEDIRGL CCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE IIGEPTFAGIVGLTNTAFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLANVRAPVQTYQV EECCCHHHHHHCCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEE LPAPTGGPSSDSLPPREPTI ECCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]