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The map label for this gene is ecpD [H]

Identifier: 194735406

GI number: 194735406

Start: 218031

End: 218768

Strand: Reverse

Name: ecpD [H]

Synonym: SeSA_A0208

Alternate gene names: 194735406

Gene position: 218768-218031 (Counterclockwise)

Preceding gene: 194738168

Following gene: 194737034

Centisome position: 4.65

GC content: 50.68

Gene sequence:

>738_bases
ATGTCTCACTCTTTAAAGTTTACTTTGTCTGCTATCGCTCTGACCGGGGCATTATTTAGCTCTGCCAGCCAGGCCGATAT
TATTATTTCTGGCACGCGTATTATTTATGATGCAAATAAAAAAGATGTCAGCGTGCGTCTGGAAAATAAAGGTAAAAGCC
CATTATTAGTTCAGAACTGGATAGATCTCGGCAATGATAATGCCGAGCCGGGCAGTATTAAAGCGCCCTTCGCCGCCACG
CCGCCGGTATCACGAATAGAACCTAAGCGCGGGCAGTCGATAAAAATTATGTATACCGCCACAGAATCGCTACCGAAAGA
TCGCGAAAGCGTTTTCTGGTTCAACGTGCTGGAAGTTCCACCGAAGGCAAATACCAACCAGGAAGAAAATAAGAATTTGC
TCCAGTTGGCGTTTCGCACCCGCATCAAACTATTTTATCGCCCGACGGGTTTACCGGGCGCCCCGGCAGAAGCGGCAAAA
CAGCTGAAATGGCAGGTCGCCAGCGAACAGGGCCATGCCGTTCTTCGCGCCGATAACCCGACTCCGTATTACGTCTCCTT
TAACTCTGCCACCTACACCAGCGGCGGAAAACGCTATGACGTCGACGCGACCATGGTTGCCCCCTTTGGCAAAGCCGCCT
TCACGGTGAAAGGACTGCAAAACGCCAGCGCAGGCAAACTGGAATTCCAGTCCATTAATGACTACGGCGGCATCATCGCT
GGCTCAGCTTCACTGTAA

Upstream 100 bases:

>100_bases
CTTTAACAGACAGTATTACAGACGATGCACATTGCAGGGTAGTAGCAAATTTCGGCGCTACTTACCCTGTTTCGGATATT
CAATACAGCAAGGACGGCTT

Downstream 100 bases:

>100_bases
TGACGTTATCACAAAGCAGGATGAAAAAGACGGTGCAAAACGTTTCCACAACCAGGACCATGCCAAAAAAGACGTTGCTC
GCGATGTGCTGTGCGTTGTT

Product: putative chaperone protein EcpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MSHSLKFTLSAIALTGALFSSASQADIIISGTRIIYDANKKDVSVRLENKGKSPLLVQNWIDLGNDNAEPGSIKAPFAAT
PPVSRIEPKRGQSIKIMYTATESLPKDRESVFWFNVLEVPPKANTNQEENKNLLQLAFRTRIKLFYRPTGLPGAPAEAAK
QLKWQVASEQGHAVLRADNPTPYYVSFNSATYTSGGKRYDVDATMVAPFGKAAFTVKGLQNASAGKLEFQSINDYGGIIA
GSASL

Sequences:

>Translated_245_residues
MSHSLKFTLSAIALTGALFSSASQADIIISGTRIIYDANKKDVSVRLENKGKSPLLVQNWIDLGNDNAEPGSIKAPFAAT
PPVSRIEPKRGQSIKIMYTATESLPKDRESVFWFNVLEVPPKANTNQEENKNLLQLAFRTRIKLFYRPTGLPGAPAEAAK
QLKWQVASEQGHAVLRADNPTPYYVSFNSATYTSGGKRYDVDATMVAPFGKAAFTVKGLQNASAGKLEFQSINDYGGIIA
GSASL
>Mature_244_residues
SHSLKFTLSAIALTGALFSSASQADIIISGTRIIYDANKKDVSVRLENKGKSPLLVQNWIDLGNDNAEPGSIKAPFAATP
PVSRIEPKRGQSIKIMYTATESLPKDRESVFWFNVLEVPPKANTNQEENKNLLQLAFRTRIKLFYRPTGLPGAPAEAAKQ
LKWQVASEQGHAVLRADNPTPYYVSFNSATYTSGGKRYDVDATMVAPFGKAAFTVKGLQNASAGKLEFQSINDYGGIIAG
SASL

Specific function: Probably mediates assembly of a pilin [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=246, Percent_Identity=59.7560975609756, Blast_Score=302, Evalue=1e-83,
Organism=Escherichia coli, GI1788428, Length=240, Percent_Identity=35.4166666666667, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI1789532, Length=238, Percent_Identity=34.8739495798319, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1790771, Length=240, Percent_Identity=31.6666666666667, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1786743, Length=221, Percent_Identity=34.841628959276, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1786936, Length=209, Percent_Identity=35.4066985645933, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1787171, Length=231, Percent_Identity=31.6017316017316, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1788677, Length=167, Percent_Identity=37.7245508982036, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI87081806, Length=237, Percent_Identity=30.8016877637131, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87082203, Length=224, Percent_Identity=28.5714285714286, Blast_Score=88, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 26556; Mature: 26425

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHSLKFTLSAIALTGALFSSASQADIIISGTRIIYDANKKDVSVRLENKGKSPLLVQNW
CCCCEEEEHHHHHHHHHHHCCCCCCEEEEECEEEEEECCCCEEEEEEECCCCCCEEEEEH
IDLGNDNAEPGSIKAPFAATPPVSRIEPKRGQSIKIMYTATESLPKDRESVFWFNVLEVP
HHCCCCCCCCCCEECCCCCCCCHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEECC
PKANTNQEENKNLLQLAFRTRIKLFYRPTGLPGAPAEAAKQLKWQVASEQGHAVLRADNP
CCCCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHEEEEECCCCCEEEEECCC
TPYYVSFNSATYTSGGKRYDVDATMVAPFGKAAFTVKGLQNASAGKLEFQSINDYGGIIA
CEEEEEECCEEECCCCEEEECCEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCCEEE
GSASL
CCCCC
>Mature Secondary Structure 
SHSLKFTLSAIALTGALFSSASQADIIISGTRIIYDANKKDVSVRLENKGKSPLLVQNW
CCCEEEEHHHHHHHHHHHCCCCCCEEEEECEEEEEECCCCEEEEEEECCCCCCEEEEEH
IDLGNDNAEPGSIKAPFAATPPVSRIEPKRGQSIKIMYTATESLPKDRESVFWFNVLEVP
HHCCCCCCCCCCEECCCCCCCCHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEECC
PKANTNQEENKNLLQLAFRTRIKLFYRPTGLPGAPAEAAKQLKWQVASEQGHAVLRADNP
CCCCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHEEEEECCCCCEEEEECCC
TPYYVSFNSATYTSGGKRYDVDATMVAPFGKAAFTVKGLQNASAGKLEFQSINDYGGIIA
CEEEEEECCEEECCCCEEEECCEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCCEEE
GSASL
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8102362; 8202364; 9278503 [H]