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The map label for this gene is rbsC [H]

Identifier: 194735352

GI number: 194735352

Start: 3969628

End: 3970593

Strand: Direct

Name: rbsC [H]

Synonym: SeSA_A4095

Alternate gene names: 194735352

Gene position: 3969628-3970593 (Clockwise)

Preceding gene: 194735992

Following gene: 194737768

Centisome position: 84.3

GC content: 56.0

Gene sequence:

>966_bases
ATGACAACCCAGGCTGTTTCTGGTCGCCGTTATTTCACTAAAGCGTGGCTTCTTGAGCAGAAGTCGCTCATTGCCCTGCT
GGTGTTGATCGCGATTGTTTCGACGTTGAGCCCCAACTTTTTTACCGTTAATAATCTGTTCAATATTCTTCAACAGACCT
CCGTCAACGCCATTATGGCGGTGGGGATGACGTTGGTGATTCTGACATCGGGGATCGATCTGTCCGTCGGTTCCCTGCTG
GCGCTCACCGGCGCGGTTGCCGCTTCAATCGTCGGCGTTGAAGTGAATGCGCTGGTCGCGGTTGCCGCCGCGCTGGCGCT
GGGCGCTGCGATTGGCGCCGTCACTGGCGTTATCGTCGCGAAAGGCCGCGTACAGGCGTTTATCGCTACGCTGGTGATGA
TGCTGCTACTGCGCGGCGTGACGATGGTTTACACCGACGGTAGCCCTGTCAACACTGGCTTTACCGATAACGCCGATCTG
TTTGGCTGGTTCGGTATCGGCCGTCCGCTGGGCGTTCCTACGCCGGTCTGGATCATGGCCATCGTCTTTATCGCCGCCTG
GTATATGCTGCATCACACCCGTCTGGGACGCTATATCTACGCGCTGGGCGGTAACGAAGCGGCGACGCGTCTGTCTGGCA
TTAGCGTGAGCAAAGTGAAAATTATCGTCTATTCACTTTGCGGCCTGACAGCGTCGCTGGCGGGCATCATTGAAGTGGCG
CGCCTCTCTTCCGCGCAGCCGACGGCGGGTACCGGCTATGAGCTGGATGCTATTGCCGCCGTGGTGCTTGGCGGCACCAG
CCTTGCAGGCGGTAAAGGACGCATTGTTGGGACATTGATCGGCGCATTGATTCTCGGCTTCCTTAATAATGGTTTGAATT
TGTTAGGTGTTTCCTCCTATTACCAGATGATCGTCAAAGCGGTGGTGATTTTGCTGGCGGTACTGGTAGACAACAAAAAG
CAGTAA

Upstream 100 bases:

>100_bases
GGCATCTCAGCGGTGAATTTACTCGCGAGCAGGCCACCCAGGAAGTGTTAATGGCTGCCGCAGTGGGCAAGCTTAATCGC
GTGAATCAGGAGTAAAAAAG

Downstream 100 bases:

>100_bases
CAACGACTACAGGACATCTGAAATATGAACATGAAAAAACTGGCTACCCTGGTATCTGCTGTTGCGCTGAGCGCCACCGT
GAGCGCGAATGCAATGGCGA

Product: ribose ABC transporter permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 320

Protein sequence:

>321_residues
MTTQAVSGRRYFTKAWLLEQKSLIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLL
ALTGAVAASIVGVEVNALVAVAAALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTDGSPVNTGFTDNADL
FGWFGIGRPLGVPTPVWIMAIVFIAAWYMLHHTRLGRYIYALGGNEAATRLSGISVSKVKIIVYSLCGLTASLAGIIEVA
RLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKK
Q

Sequences:

>Translated_321_residues
MTTQAVSGRRYFTKAWLLEQKSLIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLL
ALTGAVAASIVGVEVNALVAVAAALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTDGSPVNTGFTDNADL
FGWFGIGRPLGVPTPVWIMAIVFIAAWYMLHHTRLGRYIYALGGNEAATRLSGISVSKVKIIVYSLCGLTASLAGIIEVA
RLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKK
Q
>Mature_320_residues
TTQAVSGRRYFTKAWLLEQKSLIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLA
LTGAVAASIVGVEVNALVAVAAALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTDGSPVNTGFTDNADLF
GWFGIGRPLGVPTPVWIMAIVFIAAWYMLHHTRLGRYIYALGGNEAATRLSGISVSKVKIIVYSLCGLTASLAGIIEVAR
LSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=321, Percent_Identity=96.2616822429907, Blast_Score=574, Evalue=1e-165,
Organism=Escherichia coli, GI1790524, Length=316, Percent_Identity=39.873417721519, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1788896, Length=315, Percent_Identity=38.4126984126984, Blast_Score=187, Evalue=9e-49,
Organism=Escherichia coli, GI145693152, Length=310, Percent_Identity=36.7741935483871, Blast_Score=178, Evalue=4e-46,
Organism=Escherichia coli, GI1789992, Length=359, Percent_Identity=35.0974930362117, Blast_Score=164, Evalue=8e-42,
Organism=Escherichia coli, GI87082395, Length=302, Percent_Identity=36.7549668874172, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1788471, Length=335, Percent_Identity=36.1194029850746, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI145693214, Length=293, Percent_Identity=37.8839590443686, Blast_Score=131, Evalue=8e-32,
Organism=Escherichia coli, GI1787793, Length=286, Percent_Identity=31.4685314685315, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1787794, Length=292, Percent_Identity=29.4520547945205, Blast_Score=96, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33297; Mature: 33166

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQAVSGRRYFTKAWLLEQKSLIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHH
VGMTLVILTSGIDLSVGSLLALTGAVAASIVGVEVNALVAVAAALALGAAIGAVTGVIVA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KGRVQAFIATLVMMLLLRGVTMVYTDGSPVNTGFTDNADLFGWFGIGRPLGVPTPVWIMA
CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHH
IVFIAAWYMLHHTRLGRYIYALGGNEAATRLSGISVSKVKIIVYSLCGLTASLAGIIEVA
HHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSY
HHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHH
YQMIVKAVVILLAVLVDNKKQ
HHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TTQAVSGRRYFTKAWLLEQKSLIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHH
VGMTLVILTSGIDLSVGSLLALTGAVAASIVGVEVNALVAVAAALALGAAIGAVTGVIVA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KGRVQAFIATLVMMLLLRGVTMVYTDGSPVNTGFTDNADLFGWFGIGRPLGVPTPVWIMA
CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHH
IVFIAAWYMLHHTRLGRYIYALGGNEAATRLSGISVSKVKIIVYSLCGLTASLAGIIEVA
HHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSY
HHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHH
YQMIVKAVVILLAVLVDNKKQ
HHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]