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The map label for this gene is ydfH [C]

Identifier: 194735192

GI number: 194735192

Start: 3423476

End: 3424141

Strand: Reverse

Name: ydfH [C]

Synonym: SeSA_A3549

Alternate gene names: 194735192

Gene position: 3424141-3423476 (Counterclockwise)

Preceding gene: 194734555

Following gene: 194735885

Centisome position: 72.71

GC content: 50.0

Gene sequence:

>666_bases
GTGCAGAAGCCTAAATTAGGGAAGATTAAGCTTCTTTCAGCGAAAGAACAGGTCGCGGCGGTGCTGCGTAAAGCGATTCT
TTCGAGGGAGTTAGTGGAAGGGCAGGAGATTACGTTAGAAGGCATTGCCGGAATGGTCGGCGTGTCCAGTATGCCAGTGC
GCGAGGCGTTTCAGATTCTGGCGGCGGATGGGCTGATAAAAGTGCGCCCTAATAAAGGGGCGGTGGTGTTGGGCATCAAT
GAACAAACGATCCGTGAACACTATGAAATTCGCGCGCTGTTAGAAAGTGAGGCGGTGGCTAAAGCTTCTCGTCCCGGCAC
CGATATCTCGCGGATAGCCCAGGTGCATTATGCCGCTGAAAAGGCTCTCGCGGAAAATAACTCGGCGGAATACTCCGACC
TGAATCAGGCATTTCATATGGAAATCTGGAATGTTGCTGGCAACGAAAAAATGAAAATGTTGCTCTGTAATATGTGGAAC
GGCCTTTCGATGGGCCATAAGGTCACCGAAGAAGAGTATGCCGTGATTTCCATTCAGGAACATAAAAGTATTCTGCAAGC
TCTTGAACTTCATGATGAAACATTGGCACGCCAGCGCATGCGCGAACACATTATTCGCTCGATGGAGAATATGCTGACCC
GCTATGTTGGTGACCCTTCTGCCTGA

Upstream 100 bases:

>100_bases
GTCATACGCCAGGGGCGGCGTGATGAGATTGGGCAAGTTATGCAGCGTTATTTCCTCTCTTTAGCAGAAATAATGCGTCA
ACATATGAAGGATTGGGAAA

Downstream 100 bases:

>100_bases
TCTTTTCGCCTGCGTGAGCATCGCAGGCGCTTCAACCAATTCTTCAATTCTATTAATCACGTCCAGTAACGATCTAACCA
CGATCTTGATGTAGATCCCA

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; Transcriptional Regulator GntR Family Protein; GntR Family Regulatory Protein; GntR Domain-Containing Protein; GntR-Family Regulatory Protein; Transcriptional Regulator Gntr Family; Transcriptional Regulator MdcY Family Protein; GntR Domain Protein; Transcription Regulator; HTH-Type Transcriptional Regulator; Transcriptional Regulator GntR; Gntr Family Transcriptional Regulator; Regulatory Protein; Regulatory Protein GntR; GntR Family Transcription Regulator; GntR-Family Protein Transcriptional Regulator; Transcription Regulator Protein; FCD Domain Protein; Transcriptional Regulator GntR-Family; Transcriptional Regulator Protein; Regulatory Protein GntR Family; Regulatory Protein GntR HTH

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MQKPKLGKIKLLSAKEQVAAVLRKAILSRELVEGQEITLEGIAGMVGVSSMPVREAFQILAADGLIKVRPNKGAVVLGIN
EQTIREHYEIRALLESEAVAKASRPGTDISRIAQVHYAAEKALAENNSAEYSDLNQAFHMEIWNVAGNEKMKMLLCNMWN
GLSMGHKVTEEEYAVISIQEHKSILQALELHDETLARQRMREHIIRSMENMLTRYVGDPSA

Sequences:

>Translated_221_residues
MQKPKLGKIKLLSAKEQVAAVLRKAILSRELVEGQEITLEGIAGMVGVSSMPVREAFQILAADGLIKVRPNKGAVVLGIN
EQTIREHYEIRALLESEAVAKASRPGTDISRIAQVHYAAEKALAENNSAEYSDLNQAFHMEIWNVAGNEKMKMLLCNMWN
GLSMGHKVTEEEYAVISIQEHKSILQALELHDETLARQRMREHIIRSMENMLTRYVGDPSA
>Mature_221_residues
MQKPKLGKIKLLSAKEQVAAVLRKAILSRELVEGQEITLEGIAGMVGVSSMPVREAFQILAADGLIKVRPNKGAVVLGIN
EQTIREHYEIRALLESEAVAKASRPGTDISRIAQVHYAAEKALAENNSAEYSDLNQAFHMEIWNVAGNEKMKMLLCNMWN
GLSMGHKVTEEEYAVISIQEHKSILQALELHDETLARQRMREHIIRSMENMLTRYVGDPSA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24659; Mature: 24659

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKPKLGKIKLLSAKEQVAAVLRKAILSRELVEGQEITLEGIAGMVGVSSMPVREAFQIL
CCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCCHHHHHHHH
AADGLIKVRPNKGAVVLGINEQTIREHYEIRALLESEAVAKASRPGTDISRIAQVHYAAE
HCCCEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
KALAENNSAEYSDLNQAFHMEIWNVAGNEKMKMLLCNMWNGLSMGHKVTEEEYAVISIQE
HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHH
HKSILQALELHDETLARQRMREHIIRSMENMLTRYVGDPSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQKPKLGKIKLLSAKEQVAAVLRKAILSRELVEGQEITLEGIAGMVGVSSMPVREAFQIL
CCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCCHHHHHHHH
AADGLIKVRPNKGAVVLGINEQTIREHYEIRALLESEAVAKASRPGTDISRIAQVHYAAE
HCCCEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
KALAENNSAEYSDLNQAFHMEIWNVAGNEKMKMLLCNMWNGLSMGHKVTEEEYAVISIQE
HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHH
HKSILQALELHDETLARQRMREHIIRSMENMLTRYVGDPSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA