| Definition | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 chromosome, complete genome. |
|---|---|
| Accession | NC_011094 |
| Length | 4,709,075 |
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The map label for this gene is fimD [H]
Identifier: 194735116
GI number: 194735116
Start: 593100
End: 595712
Strand: Direct
Name: fimD [H]
Synonym: SeSA_A0591
Alternate gene names: 194735116
Gene position: 593100-595712 (Clockwise)
Preceding gene: 194737175
Following gene: 194738098
Centisome position: 12.59
GC content: 55.64
Gene sequence:
>2613_bases ATGAAGAAGACAACCTGGTTTGCAGGGCGATTTCCCGGCTATGTATCACCGTTAAGCGGCGTGGCGCTGTCGGTGTTGGC GGCGCTGTGTCCGCTGACGAGCCGCGGCGAAAGTTATTTCAACCCTGCGTTTTTGTCGGCGGATACCGCGTCTGTGGCGG ATTTATCTCGCTTTGAAAAAGGTAATCATCAGCCTCCCGGTATTTACCGGGTGGATATCTGGCGTAACGACGAATTCGTA GCGACGCAGGATATCCGTTTTGAGGCGGGCGCCGTGGGCGCCGGCGATAAATCCGGCGGCCTGATGCCTTGTTTTACACC GGAGTGGATTAAACGCCTGGGCGTGAATACCGCGGCGTTCCCTGTCTCAGATAAAGGCGTCGATACCACGTGTATTCACC TTCCTGAGAAAATCCCGGGCGCGGAGGTCGCGTTCGATTTCGCGTCGATGCGCTTAAATATTAGCTTGCCGCAGGCGTCA TTGCTCAACAGCGCGCGTGGCTATATCCCGCCGGAAGAGTGGGATGAAGGGATACCCGCCGCACTCATCAATTACAGTTT TACCGGTAGCCGCGGAACAGACAGCGATAGCTATTTTTTGAGTCTGTTGAGTGGTTTGAACTATGGCCCCTGGCGGCTGC GTAATAACGGAGCCTGGAACTATTCGAAAGGGGACGGCTATCATTCGCAACGCTGGAACAACATTGGCACCTGGGTACAG CGCGCCATCATTCCGCTAAAAAGCGAACTGGTCATAGGGGACAGCAATACCGGGAACGATGTTTTCGACAGCGTCGGCTT TCGCGGAGCGCGGCTGTACTCTTCTGACAATATGTATCCCGATAGCCTGCAGGGCTACGCCCCCACGGTTAGAGGAATCG CCCGGACGGCGGCAAAGCTGACGATACGACAGAACGGGTATGTTATCTACCAAAGCTATGTGTCGCCGGGCGCGTTTGCG ATTACCGATCTTAATCCTACCTCTTCCAGCGGCGACCTTGAGGTGACGGTAGATGAAAAAGACGGTAGCCAACAACGTTA CACGGTGCCTTACTCTACCGTTCCGCTATTGCAGCGTGAGGGCAGGGTGAAGTATGACCTGGTGGCCGGGGATTTTCGCA GCGGCAATAGTCAGCAGTCTTCGCCATTCTTTTTCCAGGGAACGGTGATTGCCGGCCTGCCTGCGGGGCTGACGGCTTAC GGCGGTACGCAACTTGCCGATCGTTACCGTGCCGTGGTGGTCGGGGCGGGGCGAAATTTGGGCGACTGGGGAGCCGTGTC GGTCGATGTCACACATGCGCGTAGCCAACTGGCAGATGACAGCACCCATCAGGGGCAATCGTTGCGTTTTCTGTACGCCA AATCGCTGAATAATTACGGGACTAATTTTCAATTGCTGGGTTACCGCTATTCCACGCGCGGATTTTACACCCTGGATGAT GTGGCATATCGCAGTATGGAAGGGTACGACTACGAATACGATAGCGACGGACGCCGCCATAAAGTGCCGGTGGCGCAGAG CTACCACAATCTCCGTTACAGCAAAAAAGGCCGCTTTCAGGTCAATATTTCGCAAAACCTGGGGGATTACGGGTCACTGT ATCTTTCCGGCAGTCAACAAAATTACTGGAATACGGCGGATACCAATACCTGGTATCAACTGGGATACGCCAGTGGATGG CAAGGCATAAGTTATTCGCTGTCATGGTCGTGGAGCGAGTCGGTGGGGATCTCAGGCGCCGACCGCATTCTGGCATTCAA TATGTCCGTTCCGTTTAGCATTCTGACCGGACGGCGCTATGCGCGCGACACTATTCTTGATCGTACTTATGCCACGTTTA ACGCCAACCGCAACCGCGACGGCGACAATAGCTGGCAGACCGGCGTGGGCGGCACGCTTCTGGAAGGACGTAATCTGAGC TACAGCGTGACGCAGGGGCGTAGCAGTAGCAATGGTTATAGCGGCAGCGCCAGCGCTAGCTGGCAGGCGACGTATGGCAC GCTGGGCGTGGGATATAACTACGATCGCGATCAGCATGACTATAACTGGCAACTTTCCGGCGGCGTGGTTGGTCATGCGG ATGGTATTACGTTTAGCCAACCGTTGGGCGATACCAATGTCTTGATTAAAGCGCCGGGAGCGAAAGGCGTGCGCATCGAA AACCAGACCGGCGTGAAAACGGACTGGCGGGGCTATGCGGTAATGCCCTACGCCACGGTATATCGCTATAACCGCGTCGC ATTAGATACCAACACGATGGACAACCATACCGATGTCGAAAATAACGTCAGCAGCGTAGTGCCGACAGAGGGCGCGCTGG TGCGGGCTGCTTTTGATACGCGGATAGGCGTAAGGGCAATCATTACCGCGAGGCTTGGCGGACGTCCGTTACCGTTTGGC GCGATAGTACGAGAAACCGCCAGCGGCATTACCAGTATGGTCGGCGATGACGGGCAAATTTATCTGAGCGGCTTGCCGCT AAAAGGTGAACTGTTCATCCAGTGGGGAGAGGGGAAAAACGCGCGTTGTATCGCCCCTTACGCCCTGGCGGAGGATAGTC TGAAGCAGGCGATTACGATAGCCAGCGCGACCTGTATCCGTCCGGCGTCATAA
Upstream 100 bases:
>100_bases CAGCGTGACATTTCAGACCGTCAATGATTACGGCGCATTGACGTCGGCGACAACGGCCAGTCTCGGTTAAGCAGATCGCG TGAAGCCACACGAGAACACG
Downstream 100 bases:
>100_bases AAGGAAAAATAGAGATGAAAATATACTCAGCGCTATTGCTGGCGGGGACCGCGCTCTTTTTCACCCATCCCGCGCTGGCG ACGGTTTGCCGCAATTCAAA
Product: outer membrane usher protein SfmD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 870; Mature: 870
Protein sequence:
>870_residues MKKTTWFAGRFPGYVSPLSGVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEKGNHQPPGIYRVDIWRNDEFV ATQDIRFEAGAVGAGDKSGGLMPCFTPEWIKRLGVNTAAFPVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQAS LLNSARGYIPPEEWDEGIPAALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQ RAIIPLKSELVIGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVSPGAFA ITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFRSGNSQQSSPFFFQGTVIAGLPAGLTAY GGTQLADRYRAVVVGAGRNLGDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWNTADTNTWYQLGYASGW QGISYSLSWSWSESVGISGADRILAFNMSVPFSILTGRRYARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLS YSVTQGRSSSNGYSGSASASWQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIE NQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLGGRPLPFG AIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAEDSLKQAITIASATCIRPAS
Sequences:
>Translated_870_residues MKKTTWFAGRFPGYVSPLSGVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEKGNHQPPGIYRVDIWRNDEFV ATQDIRFEAGAVGAGDKSGGLMPCFTPEWIKRLGVNTAAFPVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQAS LLNSARGYIPPEEWDEGIPAALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQ RAIIPLKSELVIGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVSPGAFA ITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFRSGNSQQSSPFFFQGTVIAGLPAGLTAY GGTQLADRYRAVVVGAGRNLGDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWNTADTNTWYQLGYASGW QGISYSLSWSWSESVGISGADRILAFNMSVPFSILTGRRYARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLS YSVTQGRSSSNGYSGSASASWQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIE NQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLGGRPLPFG AIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAEDSLKQAITIASATCIRPAS >Mature_870_residues MKKTTWFAGRFPGYVSPLSGVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEKGNHQPPGIYRVDIWRNDEFV ATQDIRFEAGAVGAGDKSGGLMPCFTPEWIKRLGVNTAAFPVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQAS LLNSARGYIPPEEWDEGIPAALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQ RAIIPLKSELVIGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVSPGAFA ITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFRSGNSQQSSPFFFQGTVIAGLPAGLTAY GGTQLADRYRAVVVGAGRNLGDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWNTADTNTWYQLGYASGW QGISYSLSWSWSESVGISGADRILAFNMSVPFSILTGRRYARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLS YSVTQGRSSSNGYSGSASASWQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIE NQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLGGRPLPFG AIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAEDSLKQAITIASATCIRPAS
Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1786744, Length=857, Percent_Identity=70.4784130688448, Blast_Score=1290, Evalue=0.0, Organism=Escherichia coli, GI1790772, Length=867, Percent_Identity=47.2895040369089, Blast_Score=801, Evalue=0.0, Organism=Escherichia coli, GI1787172, Length=869, Percent_Identity=47.5258918296893, Blast_Score=781, Evalue=0.0, Organism=Escherichia coli, GI1789533, Length=856, Percent_Identity=37.9672897196262, Blast_Score=556, Evalue=1e-159, Organism=Escherichia coli, GI1786332, Length=880, Percent_Identity=32.2727272727273, Blast_Score=389, Evalue=1e-109, Organism=Escherichia coli, GI1788427, Length=828, Percent_Identity=30.0724637681159, Blast_Score=316, Evalue=4e-87, Organism=Escherichia coli, GI87081778, Length=872, Percent_Identity=28.2110091743119, Blast_Score=249, Evalue=4e-67, Organism=Escherichia coli, GI1789610, Length=704, Percent_Identity=26.5625, Blast_Score=139, Evalue=7e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 95090; Mature: 95090
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTTWFAGRFPGYVSPLSGVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEK CCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHC GNHQPPGIYRVDIWRNDEFVATQDIRFEAGAVGAGDKSGGLMPCFTPEWIKRLGVNTAAF CCCCCCCEEEEEEECCCCEEEEECCEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEC PVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQASLLNSARGYIPPEEWDEGIPA CCCCCCCCEEEEECCCCCCCCCEEEEEEEEEEEEECCHHHHHHCCCCCCCHHHHCCCCCE ALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQ EEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHCCCHHHHHHH RAIIPLKSELVIGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKL HHHCCCCCEEEEECCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHEEEE TIRQNGYVIYQSYVSPGAFAITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQRE EEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCEEECCCCCCHHHHHC GRVKYDLVAGDFRSGNSQQSSPFFFQGTVIAGLPAGLTAYGGTQLADRYRAVVVGAGRNL CCEEEEEEECCCCCCCCCCCCCEEEECEEEECCCCCCCCCCCHHHHCCEEEEEEECCCCC GDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD CCCCEEEEEEHHHHHHHCCCCCCCCCEEEEEEEEHHCCCCCCEEEEEEEECCCCEEEEHH VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQ HHHHHCCCCCCCCCCCCCEEECCHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEECCCC NYWNTADTNTWYQLGYASGWQGISYSLSWSWSESVGISGADRILAFNMSVPFSILTGRRY CCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCEEEECCCHH ARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLSYSVTQGRSSSNGYSGSASAS HHHHHHHCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCC WQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIE EEEEEEEEECCCCCCCCCCCCCEEECCCEEECCCCCEECCCCCCCEEEEECCCCCCEEEE NQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDT CCCCCCCCCCCEEECCCHHHEEEEEEEEECCCCCCCCCCCCCHHHCCCCCCCEEEEECCC RIGVRAIITARLGGRPLPFGAIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKN CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCC ARCIAPYALAEDSLKQAITIASATCIRPAS CEEEECHHHHHHHHHHHHHHHHHEEECCCC >Mature Secondary Structure MKKTTWFAGRFPGYVSPLSGVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEK CCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHC GNHQPPGIYRVDIWRNDEFVATQDIRFEAGAVGAGDKSGGLMPCFTPEWIKRLGVNTAAF CCCCCCCEEEEEEECCCCEEEEECCEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEC PVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQASLLNSARGYIPPEEWDEGIPA CCCCCCCCEEEEECCCCCCCCCEEEEEEEEEEEEECCHHHHHHCCCCCCCHHHHCCCCCE ALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQ EEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHCCCHHHHHHH RAIIPLKSELVIGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKL HHHCCCCCEEEEECCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHEEEE TIRQNGYVIYQSYVSPGAFAITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQRE EEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCEEECCCCCCHHHHHC GRVKYDLVAGDFRSGNSQQSSPFFFQGTVIAGLPAGLTAYGGTQLADRYRAVVVGAGRNL CCEEEEEEECCCCCCCCCCCCCEEEECEEEECCCCCCCCCCCHHHHCCEEEEEEECCCCC GDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD CCCCEEEEEEHHHHHHHCCCCCCCCCEEEEEEEEHHCCCCCCEEEEEEEECCCCEEEEHH VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQ HHHHHCCCCCCCCCCCCCEEECCHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEECCCC NYWNTADTNTWYQLGYASGWQGISYSLSWSWSESVGISGADRILAFNMSVPFSILTGRRY CCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCEEEECCCHH ARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLSYSVTQGRSSSNGYSGSASAS HHHHHHHCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCC WQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIE EEEEEEEEECCCCCCCCCCCCCEEECCCEEECCCCCEECCCCCCCEEEEECCCCCCEEEE NQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDT CCCCCCCCCCCEEECCCHHHEEEEEEEEECCCCCCCCCCCCCHHHCCCCCCCEEEEECCC RIGVRAIITARLGGRPLPFGAIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKN CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCC ARCIAPYALAEDSLKQAITIASATCIRPAS CEEEECHHHHHHHHHHHHHHHHHEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677609 [H]