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The map label for this gene is ybdO [H]

Identifier: 194735063

GI number: 194735063

Start: 15016

End: 15963

Strand: Direct

Name: ybdO [H]

Synonym: SeSA_A0016

Alternate gene names: 194735063

Gene position: 15016-15963 (Clockwise)

Preceding gene: 194734577

Following gene: 194735831

Centisome position: 0.32

GC content: 41.03

Gene sequence:

>948_bases
ATGGGATCGAAAGGTGCCAACAAGAGCTTTGATTATAATTTAATCAAAATTCTTGACGCTGTTATTTTGTCAGGAAATGC
GGCTATGGCGGCAAAAAAGCTAGGCATTACACCGGCTGCCGTCTCTATGGCGTTAAAGCGCCTGCAGAGTTATTACCCGG
AAGAACTGTTTAGCAGAGGGAAAGGCGGGCTCATCCCCACAGCTAAGGCTGTCGACATTCACCAAAATTTCAGTCAGGTG
ATGAAACTGGTGGATGACACATTTCTCTGTAATAGCAAAAAAGATGAAGCGTTCCAGATAACGTTATTAGGCAGTGATAT
TGTTGAAAGCTATTATCTTTCTCAGCTCTATAACAGCGATATTTTTGACCGTATTTTGATAAATCATTTCTCTGTCAGAA
ATATGAATCGGGAGCGTATCAGCGAACTTCTGTTTACTGCGCAAGGCGATCTGTTGATTGGTGCCGAACCTTTGCTGGAG
TCCGGCATAGAGAATCAAATTATTGATAGTTTTAAATCATTTGTTTGTATCTGTAGCAGTAAACACATGCTGAGTACCCT
CTCACAGCTATCGCTACATCATTTTTATTCTTCGCGTCATGCGTTATATCAGCCGGGGATGGGGGCTTCAGTGATATATC
ATGATAGCGAGTTATTTAAGGATGAGCTTTACTATACTGGCAGGCGTATTGTCGGCTATCGCAGTGATTCGCTTAACGGT
TTGATGAGCATGATCGAACGAACCTCATTGATTGCATTGATGCCTTTGAAATTAGCGCTTTTTTATAAAAATCATCGTAA
ATATGACATTAAATTTATTCAGCCTCCGCCCGAACTGGCTTTGAAGTCAGTTCAGGTCTATGCATCCTGGAATAAAAATA
GTAGAAATATATCGACGATTAATGAGATGGTAAGTATGTTACAAACGCTTTCCTCCTTCCGTCGCTAA

Upstream 100 bases:

>100_bases
GATGTGATGACATTAACGATTGCTTTTTTAGATGCTGTGAATTGATTTATCTTGAGTATTATCTATATTGCTTTTTTTAG
TTTCCGGAGGCAGACAGCGA

Downstream 100 bases:

>100_bases
TACACCTCATTTTTACTCTTTGATTTAATATGGTTTTAAATGATGTGCTTTGATTTTTACCCTTCTGACAGGGCGCTTAC
ACTCCTTGTGTTAATTATTC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MGSKGANKSFDYNLIKILDAVILSGNAAMAAKKLGITPAAVSMALKRLQSYYPEELFSRGKGGLIPTAKAVDIHQNFSQV
MKLVDDTFLCNSKKDEAFQITLLGSDIVESYYLSQLYNSDIFDRILINHFSVRNMNRERISELLFTAQGDLLIGAEPLLE
SGIENQIIDSFKSFVCICSSKHMLSTLSQLSLHHFYSSRHALYQPGMGASVIYHDSELFKDELYYTGRRIVGYRSDSLNG
LMSMIERTSLIALMPLKLALFYKNHRKYDIKFIQPPPELALKSVQVYASWNKNSRNISTINEMVSMLQTLSSFRR

Sequences:

>Translated_315_residues
MGSKGANKSFDYNLIKILDAVILSGNAAMAAKKLGITPAAVSMALKRLQSYYPEELFSRGKGGLIPTAKAVDIHQNFSQV
MKLVDDTFLCNSKKDEAFQITLLGSDIVESYYLSQLYNSDIFDRILINHFSVRNMNRERISELLFTAQGDLLIGAEPLLE
SGIENQIIDSFKSFVCICSSKHMLSTLSQLSLHHFYSSRHALYQPGMGASVIYHDSELFKDELYYTGRRIVGYRSDSLNG
LMSMIERTSLIALMPLKLALFYKNHRKYDIKFIQPPPELALKSVQVYASWNKNSRNISTINEMVSMLQTLSSFRR
>Mature_314_residues
GSKGANKSFDYNLIKILDAVILSGNAAMAAKKLGITPAAVSMALKRLQSYYPEELFSRGKGGLIPTAKAVDIHQNFSQVM
KLVDDTFLCNSKKDEAFQITLLGSDIVESYYLSQLYNSDIFDRILINHFSVRNMNRERISELLFTAQGDLLIGAEPLLES
GIENQIIDSFKSFVCICSSKHMLSTLSQLSLHHFYSSRHALYQPGMGASVIYHDSELFKDELYYTGRRIVGYRSDSLNGL
MSMIERTSLIALMPLKLALFYKNHRKYDIKFIQPPPELALKSVQVYASWNKNSRNISTINEMVSMLQTLSSFRR

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786820, Length=303, Percent_Identity=25.4125412541254, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI87081684, Length=298, Percent_Identity=25.1677852348993, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87081766, Length=257, Percent_Identity=22.9571984435798, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35617; Mature: 35485

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSKGANKSFDYNLIKILDAVILSGNAAMAAKKLGITPAAVSMALKRLQSYYPEELFSRG
CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHCC
KGGLIPTAKAVDIHQNFSQVMKLVDDTFLCNSKKDEAFQITLLGSDIVESYYLSQLYNSD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHCCH
IFDRILINHFSVRNMNRERISELLFTAQGDLLIGAEPLLESGIENQIIDSFKSFVCICSS
HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCHHHHHCCCHHHHHHHHHHHHHHHCC
KHMLSTLSQLSLHHFYSSRHALYQPGMGASVIYHDSELFKDELYYTGRRIVGYRSDSLNG
HHHHHHHHHHHHHHHHHCCCHHCCCCCCCEEEEECHHHHHHHHHHCCCEEEEECCCHHHH
LMSMIERTSLIALMPLKLALFYKNHRKYDIKFIQPPPELALKSVQVYASWNKNSRNISTI
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHEEEECCCCCCHHHHH
NEMVSMLQTLSSFRR
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
GSKGANKSFDYNLIKILDAVILSGNAAMAAKKLGITPAAVSMALKRLQSYYPEELFSRG
CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHCC
KGGLIPTAKAVDIHQNFSQVMKLVDDTFLCNSKKDEAFQITLLGSDIVESYYLSQLYNSD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHCCH
IFDRILINHFSVRNMNRERISELLFTAQGDLLIGAEPLLESGIENQIIDSFKSFVCICSS
HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCHHHHHCCCHHHHHHHHHHHHHHHCC
KHMLSTLSQLSLHHFYSSRHALYQPGMGASVIYHDSELFKDELYYTGRRIVGYRSDSLNG
HHHHHHHHHHHHHHHHHCCCHHCCCCCCCEEEEECHHHHHHHHHHCCCEEEEECCCHHHH
LMSMIERTSLIALMPLKLALFYKNHRKYDIKFIQPPPELALKSVQVYASWNKNSRNISTI
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHEEEECCCCCCHHHHH
NEMVSMLQTLSSFRR
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]