Click here to switch to the map view.

The map label for this gene is yihO [H]

Identifier: 194735039

GI number: 194735039

Start: 4104107

End: 4105528

Strand: Reverse

Name: yihO [H]

Synonym: SeSA_A4227

Alternate gene names: 194735039

Gene position: 4105528-4104107 (Counterclockwise)

Preceding gene: 194735020

Following gene: 194734369

Centisome position: 87.18

GC content: 47.05

Gene sequence:

>1422_bases
ATGTCTAATCATGATCCGCTAACGCTAAAGTTGAGCCTGCGGGAAAAATGCGCCTATGGCGTGGGCGATTTCGGCTCAAA
TCTGATGCTGTGTATCGGTACGCTGTATCTACTGAAGTTTTATACCGATGAACTCGGGATGCCTGCATATTACGGTGGAA
TTATCTTTCTGGTGGCGAAATTCTTCACCGCTTTTACCGATATGCTCACCGGCGTATTGCTGGACTCACGCCGTAATATT
GGCGCAAAAGGAAAGTTTCGGCCTTTTATTCTGTATGCGTCATTTCCGGTCGCTCTGGTTGCTACTGCGCAATTCTTTGC
CACTCACTTTACTTTACCCGTTAAAACAGCCTTCGCGACGGTGCTGTTTATGTTGTTCGGTCTGTTCTACAGCCTGATGA
ACTGCTCATACGGCGCGATGGTACCCGCTATTACCAAAAATCCGCATGAGCGCGCCCAGCTCGCCGCATGGCGACAAGGC
GGCGCTACCATTGGCCTTCTTCTTTGTACCGTAGGTTTTATGCCTATTCAGGCGCTGTTTACCCGTTCCCCTTCGCTGGG
TTATCTGATTGCAGCAGTCATCTTTTCGGTCTGCGGGCTGTTCAGCATGTGGTGGTGCTTTAGCGGGGTGAAAGAACGGT
ATATCGAAACCGTGCCTGACACGCATAAACCTAGCATATTGAAGTCCTTCTGCGCGATTTTTCGTAATCCGCCGCTGCTG
GTGCTCTGCGTTGCCAATTTGTGCACGCTGGCCGCCTTTAATATCAAGCTGGCCATTCAGGTTTATTACTCTCAGTACGT
GCTGAACGATATTCATTTGTTGTCATGGATGGGTTTTTTCAGCATGGGCTGTATCCTGATTGGTGTTTTATTAGTACCTG
CTGCGGTAAAACGCTTCGGGAAAAAACAGGTTTATCTTGGTGGTCTGATATTGTGGGCCGTTGGCGATATCCTGAATTTT
ATCTGGGGTGGAACGTCATTCCTGTTTGTTATTTTCTCTTGTATCGCCTTTTTCGGTACCGCTTTCGTCAACAGCCTGAA
CTGGGCGCTGGTTCCGGATACGGTTGACTACGGTGAATGGAAAACGGGTATTCGCGCTGAAGGCTCGGTGTATACGGGTT
ATACCTTTTCCCGCAAAATTTCCGCTGCGCTTGCTGGCTTTTTGCCAGGTATTATGCTGACGCAAATCGGTTATATCCCC
AACATAGCTCAAAGTGACACCACGTTGCTTGGTTTGCGTCAGCTCATTTTTTTATGGCCTTGCGGTCTTGCCATTATCGC
AGCACTAACGATGGGCTTTTTTTATAAGCTCAATGAACAACGTTTCGCTTTTATTATCGAGGAAATTGCCCAACGAAAGA
AAACAGGTAATCAAATTGTCGCGACTAATAATAAACAAAGTATTTCTACTGTAAATAATTAA

Upstream 100 bases:

>100_bases
GAAGATGTACGTGCGAATTGTGGAAGAGATTGAGGCCCGGAAACATACGGTTTAACAACAATAAAATATAACGCCCTGCG
GGGCGTTTTGAGAGGCGATT

Downstream 100 bases:

>100_bases
ACGACGCTTGCCGCTTTATCCATCCCGATGGGTGGCGGCTTCCCTATATTTGAAAAATGGATTTATTATGAAATCTCTGA
ATACTCTAGTGATATTAACT

Product: sugar (Glycoside-Pentoside-Hexuronide) transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MSNHDPLTLKLSLREKCAYGVGDFGSNLMLCIGTLYLLKFYTDELGMPAYYGGIIFLVAKFFTAFTDMLTGVLLDSRRNI
GAKGKFRPFILYASFPVALVATAQFFATHFTLPVKTAFATVLFMLFGLFYSLMNCSYGAMVPAITKNPHERAQLAAWRQG
GATIGLLLCTVGFMPIQALFTRSPSLGYLIAAVIFSVCGLFSMWWCFSGVKERYIETVPDTHKPSILKSFCAIFRNPPLL
VLCVANLCTLAAFNIKLAIQVYYSQYVLNDIHLLSWMGFFSMGCILIGVLLVPAAVKRFGKKQVYLGGLILWAVGDILNF
IWGGTSFLFVIFSCIAFFGTAFVNSLNWALVPDTVDYGEWKTGIRAEGSVYTGYTFSRKISAALAGFLPGIMLTQIGYIP
NIAQSDTTLLGLRQLIFLWPCGLAIIAALTMGFFYKLNEQRFAFIIEEIAQRKKTGNQIVATNNKQSISTVNN

Sequences:

>Translated_473_residues
MSNHDPLTLKLSLREKCAYGVGDFGSNLMLCIGTLYLLKFYTDELGMPAYYGGIIFLVAKFFTAFTDMLTGVLLDSRRNI
GAKGKFRPFILYASFPVALVATAQFFATHFTLPVKTAFATVLFMLFGLFYSLMNCSYGAMVPAITKNPHERAQLAAWRQG
GATIGLLLCTVGFMPIQALFTRSPSLGYLIAAVIFSVCGLFSMWWCFSGVKERYIETVPDTHKPSILKSFCAIFRNPPLL
VLCVANLCTLAAFNIKLAIQVYYSQYVLNDIHLLSWMGFFSMGCILIGVLLVPAAVKRFGKKQVYLGGLILWAVGDILNF
IWGGTSFLFVIFSCIAFFGTAFVNSLNWALVPDTVDYGEWKTGIRAEGSVYTGYTFSRKISAALAGFLPGIMLTQIGYIP
NIAQSDTTLLGLRQLIFLWPCGLAIIAALTMGFFYKLNEQRFAFIIEEIAQRKKTGNQIVATNNKQSISTVNN
>Mature_472_residues
SNHDPLTLKLSLREKCAYGVGDFGSNLMLCIGTLYLLKFYTDELGMPAYYGGIIFLVAKFFTAFTDMLTGVLLDSRRNIG
AKGKFRPFILYASFPVALVATAQFFATHFTLPVKTAFATVLFMLFGLFYSLMNCSYGAMVPAITKNPHERAQLAAWRQGG
ATIGLLLCTVGFMPIQALFTRSPSLGYLIAAVIFSVCGLFSMWWCFSGVKERYIETVPDTHKPSILKSFCAIFRNPPLLV
LCVANLCTLAAFNIKLAIQVYYSQYVLNDIHLLSWMGFFSMGCILIGVLLVPAAVKRFGKKQVYLGGLILWAVGDILNFI
WGGTSFLFVIFSCIAFFGTAFVNSLNWALVPDTVDYGEWKTGIRAEGSVYTGYTFSRKISAALAGFLPGIMLTQIGYIPN
IAQSDTTLLGLRQLIFLWPCGLAIIAALTMGFFYKLNEQRFAFIIEEIAQRKKTGNQIVATNNKQSISTVNN

Specific function: Unknown

COG id: COG2211

COG function: function code G; Na+/melibiose symporter and related transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:galactoside symporter (TC 2.A.2) family [H]

Homologues:

Organism=Homo sapiens, GI122937339, Length=443, Percent_Identity=23.4762979683973, Blast_Score=69, Evalue=8e-12,
Organism=Escherichia coli, GI48994989, Length=471, Percent_Identity=80.0424628450106, Blast_Score=770, Evalue=0.0,
Organism=Escherichia coli, GI145693206, Length=457, Percent_Identity=66.9584245076586, Blast_Score=645, Evalue=0.0,
Organism=Escherichia coli, GI1787902, Length=463, Percent_Identity=32.829373650108, Blast_Score=223, Evalue=1e-59,
Organism=Escherichia coli, GI87082306, Length=462, Percent_Identity=28.3549783549784, Blast_Score=159, Evalue=4e-40,
Organism=Escherichia coli, GI1786466, Length=460, Percent_Identity=26.0869565217391, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI1790561, Length=445, Percent_Identity=27.1910112359551, Blast_Score=143, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016196
- InterPro:   IPR001927
- InterPro:   IPR018043 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52348; Mature: 52216

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS00872 NA_GALACTOSIDE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNHDPLTLKLSLREKCAYGVGDFGSNLMLCIGTLYLLKFYTDELGMPAYYGGIIFLVAK
CCCCCCEEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
FFTAFTDMLTGVLLDSRRNIGAKGKFRPFILYASFPVALVATAQFFATHFTLPVKTAFAT
HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHH
VLFMLFGLFYSLMNCSYGAMVPAITKNPHERAQLAAWRQGGATIGLLLCTVGFMPIQALF
HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
TRSPSLGYLIAAVIFSVCGLFSMWWCFSGVKERYIETVPDTHKPSILKSFCAIFRNPPLL
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCH
VLCVANLCTLAAFNIKLAIQVYYSQYVLNDIHLLSWMGFFSMGCILIGVLLVPAAVKRFG
HHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KKQVYLGGLILWAVGDILNFIWGGTSFLFVIFSCIAFFGTAFVNSLNWALVPDTVDYGEW
CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCC
KTGIRAEGSVYTGYTFSRKISAALAGFLPGIMLTQIGYIPNIAQSDTTLLGLRQLIFLWP
CCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
CGLAIIAALTMGFFYKLNEQRFAFIIEEIAQRKKTGNQIVATNNKQSISTVNN
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure 
SNHDPLTLKLSLREKCAYGVGDFGSNLMLCIGTLYLLKFYTDELGMPAYYGGIIFLVAK
CCCCCEEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH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HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]