Click here to switch to the map view.

The map label for this gene is soxS [H]

Identifier: 194735030

GI number: 194735030

Start: 4394530

End: 4394853

Strand: Reverse

Name: soxS [H]

Synonym: SeSA_A4516

Alternate gene names: 194735030

Gene position: 4394853-4394530 (Counterclockwise)

Preceding gene: 194736999

Following gene: 194734844

Centisome position: 93.33

GC content: 50.93

Gene sequence:

>324_bases
ATGTCGCATCAGCAGATAATTCAGACCCTTATCGAATGGATTGATGAACATATCGACCAACCGCTAAACATTGATGTGGT
GGCAAAAAAATCGGGCTACTCCAAGTGGTATTTACAGCGGATGTTTCGTACGGTAACGCATCAAACATTAGGCGAGTATA
TTCGCCAGCGCCGTCTCCTGTTGGCGGCTGTTGAGCTACGAACGACCGAGCGCCCGATTTTTGATATCGCGATGGACCTG
GGCTATGTATCGCAGCAAACCTTCTCGCGTGTATTCCGCCGCGAGTTCGATCGCACTCCCAGCGATTACCGTCACCGCCT
GTAG

Upstream 100 bases:

>100_bases
GATTTTTTTTCCATAAATCGCTTTACCTCAAGTTAACTTGAGGAATTATACTCGCCCGCAGACAAAACGACGAATCGAAT
ACTGTTTAAGAGGCAACAAT

Downstream 100 bases:

>100_bases
GGCGTCTGCCCGCGTATCGTCAGAGGCGCGGGCGTTTGTTGTAGCCAGGAGATGAATTCCTGCGGTGGTAACGCCTTCGC
AAAGTGCCATCCCTGACAAT

Product: DNA-binding transcriptional regulator SoxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 106

Protein sequence:

>107_residues
MSHQQIIQTLIEWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGEYIRQRRLLLAAVELRTTERPIFDIAMDL
GYVSQQTFSRVFRREFDRTPSDYRHRL

Sequences:

>Translated_107_residues
MSHQQIIQTLIEWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGEYIRQRRLLLAAVELRTTERPIFDIAMDL
GYVSQQTFSRVFRREFDRTPSDYRHRL
>Mature_106_residues
SHQQIIQTLIEWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGEYIRQRRLLLAAVELRTTERPIFDIAMDLG
YVSQQTFSRVFRREFDRTPSDYRHRL

Specific function: Transcriptional activator of the superoxide response regulon of E.coli that includes at least 10 genes such as sodA, nfo, zwf and micF. Binds the DNA sequence 5'-GCACN(7)CAA-3'. It also facilitates the subsequent binding of RNA polymerase to the micF and

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790497, Length=107, Percent_Identity=95.3271028037383, Blast_Score=212, Evalue=5e-57,
Organism=Escherichia coli, GI1790857, Length=104, Percent_Identity=53.8461538461538, Blast_Score=120, Evalue=1e-29,
Organism=Escherichia coli, GI87081928, Length=98, Percent_Identity=41.8367346938776, Blast_Score=98, Evalue=1e-22,

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 12970; Mature: 12839

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHQQIIQTLIEWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGEYIRQRRLL
CCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRREFDRTPSDYRHRL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCC
>Mature Secondary Structure 
SHQQIIQTLIEWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGEYIRQRRLL
CHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRREFDRTPSDYRHRL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]