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The map label for this gene is rimM [H]

Identifier: 194735018

GI number: 194735018

Start: 2768737

End: 2769288

Strand: Reverse

Name: rimM [H]

Synonym: SeSA_A2870

Alternate gene names: 194735018

Gene position: 2769288-2768737 (Counterclockwise)

Preceding gene: 194735365

Following gene: 194738207

Centisome position: 58.81

GC content: 50.0

Gene sequence:

>552_bases
ATGATGAGCAAGCAACTCGCCGCACAAGTACCCGCTGAACCGGTTGTACTGGGGAAAATGGGTTCTTCATACGGTATCCG
TGGTTGGCTCAGAGTGTTTTCCTCCACTGAAGACGCCGAAAGCATTTTTGACTATCAGCCCTGGTTTATCCAGAAGGCGG
GTCAGTGGCAGCAGGTACAGCTGGAAAGCTGGAAGCACCACAATCAGGATCTGATCATCAAGCTGAAAGGCGTTGACGAT
CGAGATGCCGCGAATCTTCTGACCAATTGCGAAATTGTCGTGGATTCCTCGCAACTTCCTGCGCTTGAGGAGGGAGACTA
CTACTGGAAAGACCTGATGGGCTGCCAGGTAGTCACCGCTGAAGGCTACGATCTCGGTAAAGTTATCGACATGATGGAAA
CCGGGTCGAATGACGTTCTCGTCATTAAGGCGAACCTGAAAGATGCATTTGGTATCAAGGAACGACTAGTACCGTTCCTC
GATGGGCAGGTTATCAAGAAAGTCGATCTCGCTACTCGTACTATCGAAGTAGACTGGGATCCTGGTTTTTAA

Upstream 100 bases:

>100_bases
TCGCATCGCTCACTGGGTTGGCCAGGGCGCAACCATTTCCGATCGCGTTGCGGCGCTGATCAAAGAAGTAAAAAAAGCAG
CTTAATCTGTCACGGTGGTC

Downstream 100 bases:

>100_bases
ACCACCGAATAAACGGTAATAAATGGCGTTATGGGGATTGGCTTGTGTTTATTGGCATAGTTAGCCTGTTTCCTGAAATG
TTCCGCGCAATTACCGATTA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MMSKQLAAQVPAEPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLIIKLKGVDD
RDAANLLTNCEIVVDSSQLPALEEGDYYWKDLMGCQVVTAEGYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFL
DGQVIKKVDLATRTIEVDWDPGF

Sequences:

>Translated_183_residues
MMSKQLAAQVPAEPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLIIKLKGVDD
RDAANLLTNCEIVVDSSQLPALEEGDYYWKDLMGCQVVTAEGYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFL
DGQVIKKVDLATRTIEVDWDPGF
>Mature_183_residues
MMSKQLAAQVPAEPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLIIKLKGVDD
RDAANLLTNCEIVVDSSQLPALEEGDYYWKDLMGCQVVTAEGYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFL
DGQVIKKVDLATRTIEVDWDPGF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=182, Percent_Identity=93.956043956044, Blast_Score=359, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 20600; Mature: 20600

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSKQLAAQVPAEPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQ
CCCCHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCCCHHHHHCCCCCEEECCCCCEEEE
LESWKHHNQDLIIKLKGVDDRDAANLLTNCEIVVDSSQLPALEEGDYYWKDLMGCQVVTA
EHHHCCCCCEEEEEEECCCCCCHHHHHCCCEEEEECCCCCCCCCCCHHHHHCCCCEEEEE
EGYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVDWD
CCCCHHHHHHHHHCCCCCEEEEEECCCCHHCHHHHHHHHCCCHHHHEEEEEEEEEEEECC
PGF
CCC
>Mature Secondary Structure
MMSKQLAAQVPAEPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQ
CCCCHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCCCHHHHHCCCCCEEECCCCCEEEE
LESWKHHNQDLIIKLKGVDDRDAANLLTNCEIVVDSSQLPALEEGDYYWKDLMGCQVVTA
EHHHCCCCCEEEEEEECCCCCCHHHHHCCCEEEEECCCCCCCCCCCHHHHHCCCCEEEEE
EGYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVDWD
CCCCHHHHHHHHHCCCCCEEEEEECCCCHHCHHHHHHHHCCCHHHHEEEEEEEEEEEECC
PGF
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA