Click here to switch to the map view.

The map label for this gene is yggS [H]

Identifier: 194734660

GI number: 194734660

Start: 3160938

End: 3161642

Strand: Direct

Name: yggS [H]

Synonym: SeSA_A3274

Alternate gene names: 194734660

Gene position: 3160938-3161642 (Clockwise)

Preceding gene: 194734127

Following gene: 194738227

Centisome position: 67.12

GC content: 53.9

Gene sequence:

>705_bases
ATGAACGATATCGCGCATAACCTGGCATACATCCGGGACAAAATCTCCGCCGCGGCGACGCGTTGCGGCCGCTCTTCAGA
AGAAGTTACGTTGCTTGCAGTGAGTAAAACCAAACCTGCGAGCGACATCGCAGAAGCCATTGCCGCCGGACAACGGGCAT
TTGGTGAAAATTATGTACAAGAGGGGGTGGAAAAAATCCGCCACTTTCAGGAAGCGAAAGTGGAAGGCCTGCACTGGCAC
TTTATAGGCCCTTTACAGTCCAACAAAAGTCGGCTGGTGGCCGAGCATTTTGACTGGTGTCATACCATCGATCGCCTGCG
TATCGCCTCGCGGCTGAGCGAACAGCGTCCGGATAATCTGCCGGCGCTAAATGTTCTGATCCAAATTAATATCAGCGATG
AAAACAGCAAATCAGGCATTCCGCTGGCGGAACTGGATGAGCTGGCCGCTGCGGTGGCTACACTGCCGCGTCTGCGGCTT
CGCGGACTGATGGCGATCCCGGCGCCAGAGTCAGATTATGTAAGGCAGTTTGAAGTCGCACGTCAAATGGCTGTAGCATT
TGCCGGGCTGAAAGCGCGCTACCCTGACGTTGATACCCTATCTCTGGGTATGAGCGACGATATGGAAGCCGCGATTGCGG
CAGGTAGCACAATGGTGCGCATCGGCACCGCTATCTTTGGTGCTCGTGATTACACAAAAAATTAA

Upstream 100 bases:

>100_bases
CATCGCGCAGGCCAGGCGTTACACAGGTGTAGATCCGAGACGTTATGCTTTACACTAAGCGTCACAATTTCTTCCATATT
CATATAAACATCCTCGGAAA

Downstream 100 bases:

>100_bases
GGAAAACTGAGGAACGCCATGAATACGTTGACCTTCCTGCTCTCAACGGTAATTGAGCTGTATACCATGGTGCTATTATT
GCGCGTGTGGATGCAGTGGG

Product: alanine racemase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MNDIAHNLAYIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEGVEKIRHFQEAKVEGLHWH
FIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPALNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRL
RGLMAIPAPESDYVRQFEVARQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYTKN

Sequences:

>Translated_234_residues
MNDIAHNLAYIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEGVEKIRHFQEAKVEGLHWH
FIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPALNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRL
RGLMAIPAPESDYVRQFEVARQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYTKN
>Mature_234_residues
MNDIAHNLAYIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEGVEKIRHFQEAKVEGLHWH
FIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPALNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRL
RGLMAIPAPESDYVRQFEVARQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYTKN

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=218, Percent_Identity=38.9908256880734, Blast_Score=122, Evalue=2e-28,
Organism=Escherichia coli, GI1789321, Length=234, Percent_Identity=88.8888888888889, Blast_Score=428, Evalue=1e-121,
Organism=Caenorhabditis elegans, GI17533025, Length=225, Percent_Identity=35.1111111111111, Blast_Score=119, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6319435, Length=235, Percent_Identity=37.0212765957447, Blast_Score=113, Evalue=3e-26,
Organism=Drosophila melanogaster, GI45550861, Length=215, Percent_Identity=41.8604651162791, Blast_Score=135, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25672; Mature: 25672

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDIAHNLAYIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
EGVEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNL
HHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PALNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPAPESDYVRQFEVA
CEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHH
RQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYTKN
HHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNDIAHNLAYIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
EGVEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNL
HHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PALNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPAPESDYVRQFEVA
CEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHH
RQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYTKN
HHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]