Click here to switch to the map view.

The map label for this gene is yhbQ [H]

Identifier: 194734158

GI number: 194734158

Start: 3340528

End: 3340890

Strand: Direct

Name: yhbQ [H]

Synonym: SeSA_A3459

Alternate gene names: 194734158

Gene position: 3340528-3340890 (Clockwise)

Preceding gene: 194736340

Following gene: 194735479

Centisome position: 70.94

GC content: 53.17

Gene sequence:

>363_bases
GTGTCCATCTTTATTCTCGCTTATACTGGGAACCTGAAAATTATCATGCTGATGGCGACAATGACACCCTGGTATCTGTA
TCTGATTCGTACTGCAGACAATGCGCTTTACACCGGAATAACCACCGATGTGGCGCGTCGTTACAGGCAGCATCAAACGG
GAAAAGGCGCAAAAGCATTACGGGGAAAAGGCGAGTTAACGCTGGCGTTTGCGGCGCAGGTCGGCGATCGCTCGCTGGCC
CTGCGCATAGAGTATCGCATCAAACAGCTCACAAAGCGCCAGAAGGAGCGCCTTGTGACGGAACGCGAAGCGTTTGAGGC
GCTGCTGTCCAGCCTGCAAACGCCGGTGCTTAAAAACGATTGA

Upstream 100 bases:

>100_bases
GAACAAATAAAACGCATTGGCGCACCACAGCTCTCCCTCATGGTGTACGCACCAGGTCACCACGTGTTGTTTCGCCAGCC
AACGGCCAATAGCGGTAAGT

Downstream 100 bases:

>100_bases
AGTGGTCGTGATACTCCACCAGCCCCGTCACGCCTTCCAGCGCATCCTCAGCCAAACGGTGTACCTGGAAAGCGCTTTCC
GTACCGGGCCAACGGCAGTG

Product: GIY-YIG nuclease superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MSIFILAYTGNLKIIMLMATMTPWYLYLIRTADNALYTGITTDVARRYRQHQTGKGAKALRGKGELTLAFAAQVGDRSLA
LRIEYRIKQLTKRQKERLVTEREAFEALLSSLQTPVLKND

Sequences:

>Translated_120_residues
MSIFILAYTGNLKIIMLMATMTPWYLYLIRTADNALYTGITTDVARRYRQHQTGKGAKALRGKGELTLAFAAQVGDRSLA
LRIEYRIKQLTKRQKERLVTEREAFEALLSSLQTPVLKND
>Mature_119_residues
SIFILAYTGNLKIIMLMATMTPWYLYLIRTADNALYTGITTDVARRYRQHQTGKGAKALRGKGELTLAFAAQVGDRSLAL
RIEYRIKQLTKRQKERLVTEREAFEALLSSLQTPVLKND

Specific function: Unknown

COG id: COG2827

COG function: function code L; Predicted endonuclease containing a URI domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0213 family [H]

Homologues:

Organism=Escherichia coli, GI1789545, Length=100, Percent_Identity=81, Blast_Score=169, Evalue=5e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022992
- InterPro:   IPR000305 [H]

Pfam domain/function: PF01541 GIY-YIG [H]

EC number: NA

Molecular weight: Translated: 13681; Mature: 13550

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIFILAYTGNLKIIMLMATMTPWYLYLIRTADNALYTGITTDVARRYRQHQTGKGAKAL
CEEEEEEEECCEEEEEEEHHHCHHHEEEEEECCCEEEECCHHHHHHHHHHHCCCCCCHHH
RGKGELTLAFAAQVGDRSLALRIEYRIKQLTKRQKERLVTEREAFEALLSSLQTPVLKND
CCCCCEEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SIFILAYTGNLKIIMLMATMTPWYLYLIRTADNALYTGITTDVARRYRQHQTGKGAKAL
EEEEEEEECCEEEEEEEHHHCHHHEEEEEECCCEEEECCHHHHHHHHHHHCCCCCCHHH
RGKGELTLAFAAQVGDRSLALRIEYRIKQLTKRQKERLVTEREAFEALLSSLQTPVLKND
CCCCCEEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA